Difference between revisions of "Data contained in WormMine"
From WormBaseWiki
Jump to navigationJump to searchLine 2: | Line 2: | ||
{| border="1" | {| border="1" | ||
− | + | ! Source !! Description !! Source !! Species !! Data mapping | |
|- | |- |
Revision as of 20:11, 2 May 2013
This lists all data sources contained in WormMine
Source | Description | Source | Species | Data mapping |
---|---|---|---|---|
GO | Ontology terms and relationships comprising GO | GO project website. | N/A | |
GO Annotations | Relationships between Genes and GO | GO project website. | Caenorhabditis elegans | |
Genomic sequences | Fasta DNA sequences | WormBase FTP | Caenorhabditis elegans | |
Protein sequences | Fasta peptide sequences | WormBase FTP | Caenorhabditis elegans | |
Gene locations | Gene chromosomal coordinates | WormBase FTP GFF3 | Caenorhabditis elegans | |
Transcript locations | Transcript chromosomal coordinates | WormBase FTP GFF3 | Caenorhabditis elegans | |
CDS locations | CDS chromosomal coordinates | WormBase FTP GFF3 | Caenorhabditis elegans | |
Gene metadata | AceDB XML dump | All in AceDB | LINK | |
Transcript metadata | AceDB XML dump | All in AceDB | LINK | |
CDS metadata | AceDB XML dump | All in AceDB | LINK | |
Variation metadata | AceDB XML dump | All in AceDB | LINK | |
Protein metadata | AceDB XML dump | All in AceDB | LINK | |
Phenotype metadata | AceDB XML dump | All in AceDB | LINK | |
Expression Pattern metadata | AceDB XML dump | All in AceDB | LINK | |
Anatomy Term metadata | AceDB XML dump | All in AceDB | LINK | |
Expression Cluster metadata | AceDB XML dump | All in AceDB | LINK | |
Life Stage metadata | AceDB XML dump | All in AceDB | LINK
|