Difference between revisions of "CCC Workflow"
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*Yuling will perform CCC searches on each corpus. | *Yuling will perform CCC searches on each corpus. | ||
**C. elegans search will coincide with SVM runs. | **C. elegans search will coincide with SVM runs. | ||
| + | ***C. elegans source files will be here: http://textpresso-dev.caltech.edu/ccc_results/celegans/ | ||
**dictyBase search will be weekly or as often as Bob sends Yuling PMIDs to search. | **dictyBase search will be weekly or as often as Bob sends Yuling PMIDs to search. | ||
***Bob adds new dictyBase papers on Mondays and will send a list of PMIDs to Yuling to run through the CCC pipeline on the subsequent Tuesday. | ***Bob adds new dictyBase papers on Mondays and will send a list of PMIDs to Yuling to run through the CCC pipeline on the subsequent Tuesday. | ||
| + | ***dictyBase source files will be here: http://textpresso-dev.caltech.edu/ccc_results/dicty/ | ||
**TAIR search will be... | **TAIR search will be... | ||
| + | ***TAIR source files will be here: http://textpresso-dev.caltech.edu/ccc_results/tair/ | ||
*Cronjobs will look for new source files on textpresso-dev and transfer them to the appropriate MOD directory on tazendra. | *Cronjobs will look for new source files on textpresso-dev and transfer them to the appropriate MOD directory on tazendra. | ||
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*New gpi files with updated gene - identifier mappings should be placed where?? | *New gpi files with updated gene - identifier mappings should be placed where?? | ||
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| + | Back to [[WormBase]] | ||
Latest revision as of 20:17, 29 August 2013
- Yuling will perform CCC searches on each corpus.
- C. elegans search will coincide with SVM runs.
- C. elegans source files will be here: http://textpresso-dev.caltech.edu/ccc_results/celegans/
- dictyBase search will be weekly or as often as Bob sends Yuling PMIDs to search.
- Bob adds new dictyBase papers on Mondays and will send a list of PMIDs to Yuling to run through the CCC pipeline on the subsequent Tuesday.
- dictyBase source files will be here: http://textpresso-dev.caltech.edu/ccc_results/dicty/
- TAIR search will be...
- TAIR source files will be here: http://textpresso-dev.caltech.edu/ccc_results/tair/
- C. elegans search will coincide with SVM runs.
- Cronjobs will look for new source files on textpresso-dev and transfer them to the appropriate MOD directory on tazendra.
- When new sources files are available, scripts will run to generate and populate the tables needed for the curation form.
- Curators will get an email alert telling them that there is/is not new source data available for curation.
- When new source files are generated the accession mappings file on textpresso-dev will be updated to create a new pmid_data file for the curation form.
- New gpi files with updated gene - identifier mappings should be placed where??
Back to WormBase
