Difference between revisions of "CCC Workflow"
From WormBaseWiki
Jump to navigationJump to search| Line 4: | Line 4: | ||
***Bob adds new dictyBase papers on Mondays and will send a list of PMIDs to Yuling to run through the CCC pipeline on the subsequent Tuesday. | ***Bob adds new dictyBase papers on Mondays and will send a list of PMIDs to Yuling to run through the CCC pipeline on the subsequent Tuesday. | ||
**TAIR search will be... | **TAIR search will be... | ||
| + | |||
| + | *Cronjobs will look for new source files on textpresso-dev and transfer them to the appropriate MOD directory on tazendra. | ||
| + | *When new sources files are available, scripts will run to generate and populate the tables needed for the curation form. | ||
| + | *Curators will get an email alert telling them that there is/is not new source data available for curation. | ||
Revision as of 19:47, 29 August 2013
- Yuling will perform CCC searches on each corpus.
- C. elegans search will coincide with SVM runs.
- dictyBase search will be weekly or as often as Bob sends Yuling PMIDs to search.
- Bob adds new dictyBase papers on Mondays and will send a list of PMIDs to Yuling to run through the CCC pipeline on the subsequent Tuesday.
- TAIR search will be...
- Cronjobs will look for new source files on textpresso-dev and transfer them to the appropriate MOD directory on tazendra.
- When new sources files are available, scripts will run to generate and populate the tables needed for the curation form.
- Curators will get an email alert telling them that there is/is not new source data available for curation.
