Difference between revisions of "2016 Advisory Board Meeting"
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** Paul Kersey, Matt Berriman, Kevin Howe, Bruce Bolt, Jane Lomax, Michael Paulini, Paul Davis, Gary Williams | ** Paul Kersey, Matt Berriman, Kevin Howe, Bruce Bolt, Jane Lomax, Michael Paulini, Paul Davis, Gary Williams | ||
* OICR | * OICR | ||
− | |||
− | |||
− | |||
− | |||
== Travel == | == Travel == | ||
* Hinxton | * Hinxton | ||
− | ** Will fly out on the | + | ** Will fly out on the 2nd of Feb, and return on Sun 7th Feb (cheap flights) |
* OICR | * OICR | ||
* Remote workers | * Remote workers | ||
** Mary Ann - arrive 2nd Feb (evening), leave 7th Feb (evening) | ** Mary Ann - arrive 2nd Feb (evening), leave 7th Feb (evening) | ||
− | =Advisors= | + | |
+ | = Advisors = | ||
* [http://lab.stajich.org/home/people/jason-stajich Jason Stajich] | * [http://lab.stajich.org/home/people/jason-stajich Jason Stajich] | ||
Line 28: | Line 25: | ||
* [http://irp.nih.gov/pi/brian-oliver Brian Oliver] | * [http://irp.nih.gov/pi/brian-oliver Brian Oliver] | ||
* [http://hobertlab.org/ Oliver Hobert] | * [http://hobertlab.org/ Oliver Hobert] | ||
− | * | + | * Monte Westerfield (possible) |
− | * | + | * Robin Gasser (possible) |
+ | |||
+ | |||
+ | = Discussion topics = | ||
+ | |||
+ | == Organisation of SAB talks == | ||
+ | |||
+ | Propose organising the agenda into the following cross-site themes: | ||
− | + | * '''Curation''' | |
+ | ** Current status | ||
+ | *** "Genetic" curation (i.e. literature) | ||
+ | *** "Genomic" curation (gene structures etc) | ||
+ | ** Scaling up literature curation | ||
+ | *** Increased use of automation (text mining, automated concise descriptions) | ||
+ | *** Community curation status | ||
− | + | * '''User experience''' | |
+ | ** Overview of entry points to WormBase | ||
+ | *** Documentation and outreach strategy | ||
+ | ** Visualisation of complex data | ||
+ | *** WoBr, SoBr | ||
+ | ** Data mining | ||
+ | *** WormMine, ParaSite BioMart | ||
+ | ** Plans for new tools | ||
+ | *** e.g. enrichment tool, RNASeq querying | ||
− | * | + | * '''Infrastructure and interoperability''' |
− | * | + | ** Overview of data management infrastructure |
− | ** | + | *** WormBase and ParaSite |
− | ** | + | ** Database migration : progress and status |
− | ** | + | *** Incl: what is the plan and timeline for incorporating the new database in the build? In curation workflows? |
+ | ** Interoperability with other MODs | ||
+ | *** InterMod project | ||
− | == | + | == Specific topics for project meeting / working groups == |
− | * Cross-site | + | * Cross-site communication |
− | + | ** Unification of documentation and code; what are our standards for documentation? For code? | |
* Database migration | * Database migration | ||
− | ** | + | ** Specific plans for the next 6-12 months |
− | * WormBase | + | * WormBase + WBParaSite integration |
− | + | ||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
= Agenda (preliminary) = | = Agenda (preliminary) = | ||
+ | |||
+ | == Wed 3rd Feb == | ||
+ | |||
+ | * 1400 : Project meeting (part one) | ||
== Thu 4th Feb == | == Thu 4th Feb == | ||
− | * | + | (tentative) |
− | * | + | |
− | + | * 0900-1200 : Curation : status and plans | |
− | + | * 1300-1530 : User experience | |
+ | * 1600-1730 : Infrastructure (incl database migration) | ||
== Fri 5th Feb == | == Fri 5th Feb == | ||
+ | |||
+ | * 0800-0900 : Advisors breakfast | ||
+ | * 0900-1130 : Advisors report back to whole group | ||
+ | * 1400-whenever : Project meeting (part two) |
Revision as of 14:30, 21 December 2015
The 2016 edition of the WormBase Scientific Advisory Board meeting will take place at Caltech on 4/5 Feb 2016.
Contents
Logistics
Attending
- Hinxton
- Paul Kersey, Matt Berriman, Kevin Howe, Bruce Bolt, Jane Lomax, Michael Paulini, Paul Davis, Gary Williams
- OICR
Travel
- Hinxton
- Will fly out on the 2nd of Feb, and return on Sun 7th Feb (cheap flights)
- OICR
- Remote workers
- Mary Ann - arrive 2nd Feb (evening), leave 7th Feb (evening)
Advisors
- Jason Stajich
- Mike Cherry
- Brian Oliver
- Oliver Hobert
- Monte Westerfield (possible)
- Robin Gasser (possible)
Discussion topics
Organisation of SAB talks
Propose organising the agenda into the following cross-site themes:
- Curation
- Current status
- "Genetic" curation (i.e. literature)
- "Genomic" curation (gene structures etc)
- Scaling up literature curation
- Increased use of automation (text mining, automated concise descriptions)
- Community curation status
- Current status
- User experience
- Overview of entry points to WormBase
- Documentation and outreach strategy
- Visualisation of complex data
- WoBr, SoBr
- Data mining
- WormMine, ParaSite BioMart
- Plans for new tools
- e.g. enrichment tool, RNASeq querying
- Overview of entry points to WormBase
- Infrastructure and interoperability
- Overview of data management infrastructure
- WormBase and ParaSite
- Database migration : progress and status
- Incl: what is the plan and timeline for incorporating the new database in the build? In curation workflows?
- Interoperability with other MODs
- InterMod project
- Overview of data management infrastructure
Specific topics for project meeting / working groups
- Cross-site communication
- Unification of documentation and code; what are our standards for documentation? For code?
- Database migration
- Specific plans for the next 6-12 months
- WormBase + WBParaSite integration
Agenda (preliminary)
Wed 3rd Feb
- 1400 : Project meeting (part one)
Thu 4th Feb
(tentative)
- 0900-1200 : Curation : status and plans
- 1300-1530 : User experience
- 1600-1730 : Infrastructure (incl database migration)
Fri 5th Feb
- 0800-0900 : Advisors breakfast
- 0900-1130 : Advisors report back to whole group
- 1400-whenever : Project meeting (part two)