Difference between revisions of "2014 Advisory Board Meeting"
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** Overview (Kevin - 20 mins) | ** Overview (Kevin - 20 mins) | ||
** Sequence curation update (including parasitic nematodes) (Paul / Gary / Michael - 2 x 15 mins) | ** Sequence curation update (including parasitic nematodes) (Paul / Gary / Michael - 2 x 15 mins) | ||
− | ** Sequence Feature Curation (Mary Ann - 10 mins) | + | ** Regulatory Sequence Feature Curation (Mary Ann - 10 mins) |
** WormBase ParaSite (Kevin - 15 mins) | ** WormBase ParaSite (Kevin - 15 mins) | ||
Revision as of 10:59, 19 September 2014
Contents
Logistics
Advisors
- Julie Ahringer
- Mario de Bono
- Nick Brown
- Jonathan Ewbank
- Ralf Sommer
- Val Wood
- Ewan Birney
- Peter Good
- Brian Brunk
Dates and Location
- EBI, Hinxton, UK
- Sunday 5th October PM: Consortium meeting, EBI (advisors not present)
- Monday 6th October: whole-group advisory board meeting (talks and discussion), EBI
- Tuesday 7th October: AM - advisors report back (first to whole group, then to PIs); PM - depart
Arrivals/departures
- Accommodation: all delegates to be housed on Hinxton genome campus.
- SAB arrive Sunday evening, leave Tuesday afternoon
- Staff: arrive Sat evening (or Sunday morning), leave Tuesday afternoon/evening
Talk ideas
- Cross-site themes
- Database migration
- Topic curation/pages
- Human Disease Portal
- Improved community annotation via a CANTO-like tool
- WormBase ParaSite
Confirmed talks
estimated times should INCLUDE discussion!!!!!!
- Introduction/Vision/Issues (Paul Sternberg)
- Web-site
- Introduction (Todd - 20 mins)
- Development summary (Sibyl/Todd - ?? mins)
- Sequence annotation and production informatics
- Overview (Kevin - 20 mins)
- Sequence curation update (including parasitic nematodes) (Paul / Gary / Michael - 2 x 15 mins)
- Regulatory Sequence Feature Curation (Mary Ann - 10 mins)
- WormBase ParaSite (Kevin - 15 mins)
- Literature curation and functional annotation
- Overview (Chris - 20 mins)
- GO curation and modeling (Kimberly - 15 mins)
- Worm models of human disease (Ranjana - 10 mins)
- Gene expression (Wen Chen - 10 mins)
- Ontology browser and use (Raymond - 10 mins)
- Nomenclature
- update (Mary Ann - 10 mins)
- Database migration and WormBase 3.0 vision
- An overview of EuthPathDB infrastructure and production informatics (Brian Brunk - 15 mins)
- CANTO (Val Wood - 10 mins)
- Discussion about vision for WormBase 3.0 (all)
Draft Agenda
- Sunday 5th October
- PM: consortium meeting
- working groups:
- database migration
- phenologs: curating phenotypes/variation for better comparability with human disease gene function
- RNAi mapping (review of mapping pipeline and extension to other species)
- group discussion of website and user experience
- working groups:
- PM: consortium meeting
- Monday 5th October
- AM: talks (TBD)
- PM: talks (TBD)
- Tuesday 7th October
- 8-9.30am: advisors meet over breakfast
- 9.30am-12pm - advisors report back to whole group and/or PIs
- PM: depart; for those with later flights, potential for breakout groups