WormBase SAB Meeting
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SAB Meeting 2011
Contents
SAB 2011
California Institute of Technology, February 3rd - 4th
Wednesday 2nd Feb – Pre-Meeting
(WormBase staff only)
6:30 – 18:00
Put right the World
Thursday 3rd Feb – Millikan Board Room
9:00 - 12:00:
- Introduction: Where we are; Hinxton Reorganization Paul Sternberg
- Build Process (+ models?) - Kevin Howe
- Site usage; introduction to the new site (Todd; 30 minutes)
- Tour of the new website (Abby; 30 minutes)
- Process and pathway curation and display
DISCUSSION TOPICS
Sequence curation manual versus RNA-seq; how do we automate creation of new isoforms Handling EST-based and fragmented genomes GBrowse: making it -seq friendly Interaction browser: what shall we use?
BELOW IS still mostly 2008 SCHEDULE
Morning: Website, UI, Build, Orthology
- Introduction: Hinxton Reorganization Paul Sternberg
- New Website:
- Genome Browser:
- Build Process:
- Comparative Analysis:
- modENCODE & Chado migration
13:00 – 15:30 Sequence curation and analysis, other nematodes
- Introduction: John Spieth
- Curation Tool: Gary Williams
- Current methods and metrics:
- Briggsae curation and SNPS:
- Future curation:
15:30 - Literature Curation
- Textpresso-based Curation: Kimberly Van Auken
- Overview;Phenotype Curation: Gary Schindelman
- Generalizing Phenote: Juancarlos Chan
- Genetics: Mary Ann Tuli
- Cell-centric curation: Raymond Lee
- Gene Regulation: Xioadong Wang
General Discussion
- Coordination among sites
- Quality control
- Outreach
- Database migration community annotation
Friday 4th Feb
8:30 – 9:00 Advisors breakfast
9:30 – 12:00 Advisors summary report
12:00 – 13:00 Lunch
13:00 – Discussion
Arrivals/Departures
Arrive
- Sanger Crew - Pasadena Monday late afternoon/evening?
Depart
- Sanger Crew minus Michael - Pasadena Sunday before lunch?
- Michael P. - Pasadena Friday PM?