Unused Attributes
From WormBaseWiki
Jump to navigationJump to searchThe following attributes are unused in the current Datomic-based DB prototype. It seems likely that many of them could be removed when we switch database.
Attribute | ACeDB Model | ACeDB Tag | Notes | |
---|---|---|---|---|
:2-point-data/linkage | ?2_point_data | Linkage | ||
:2-point-data/locus-2 | ?2_point_data | Locus_2 | ||
:2-point-data.locus-2/locus | ?2_point_data | Locus_2 (1) | ||
:2-point-data.locus-2/variation | ?2_point_data | Locus_2 (2) | ||
:2-point-data.recs-all/fixme | ?2_point_data | Recs_all (4) | ||
:ace2so/description | ?Ace2SO | Description | ||
:address.other-phone/type | #Address | Other_phone (2) | ||
:affiliation/affiliation-address | #Affiliation | Affiliation_address | ||
:analysis/species-in-analysis | ?Analysis | Species_in_analysis | ||
:anatomy-term/evidence | ?Anatomy_term | Evidence | Remove (raymond) | |
:anatomy-term/reference | ?Anatomy_term | Reference | Remove (raymond) | |
:anatomy-term/url | ?Anatomy_term | URL | Remove (raymond) | |
:anatomy-term/version | ?Anatomy_term | Version | Remove (raymond) | |
:anatomy-term.version/int-a | ?Anatomy_term | Version (1) | Remove (raymond) | |
:anatomy-term.version/int-b | ?Anatomy_term | Version (2) | Remove (raymond) | |
:antibody/person | ?Antibody | Person | ||
:ao-code/description | ?AO_code | Description | Remove (raymond) | |
:ao-code/remark | ?AO_code | Remark | Remove (raymond) | |
:ao-code.remark/text | ?AO_code | Remark (1) | Remove (raymond) | |
:balancer/locus | ?Balancer | Locus | ||
:cds/concise-description | ?CDS | Concise_description | ||
:cds/confidential-remark | ?CDS | Confidential_remark | ||
:cds/detailed-description | ?CDS | Detailed_description | ||
:cds.concise-description/text | ?CDS | Concise_description (1) | ||
:cds.detailed-description/text | ?CDS | Detailed_description (1) | ||
:cell/go-term | ?Cell | GO_term | Remove ?Cell entirely (raymond) | |
:cell.go-term/go-code | ?Cell | GO_term (2) | Remove ?Cell entirely (raymond) | |
:cell.go-term/go-term | ?Cell | GO_term (1) | Remove ?Cell entirely (raymond) | |
:clone/does-not-hybridize-to | ?Clone | Does_not_hybridize_to | ||
:clone/evidence | ?Clone | Evidence | ||
:clone/gel | ?Clone | Gel | ||
:clone/in-situ | ?Clone | In_Situ | ||
:clone/negative-locus | ?Clone | Negative_locus | ||
:clone/pattern | ?Clone | Pattern | ||
:clone/person | ?Clone | Person | ||
:clone/pmap | ?Clone | pMap | ||
:clone.canonical-for/start | ?Clone | Canonical_for (2) | ||
:clone.canonical-for/stop | ?Clone | Canonical_for (3) | ||
:clone.does-not-hybridize-to/clone | ?Clone | Does_not_hybridize_to (1) | ||
:clone.does-not-hybridize-to/grid | ?Clone | Does_not_hybridize_to (2) | ||
:clone.gel/motif | ?Clone | Gel (1) | ||
:clone.in-situ/start | ?Clone | In_Situ (1) | ||
:clone.in-situ/stop | ?Clone | In_Situ (2) | ||
:clone.inside-rearr/author | ?Clone | Inside_rearr (2) | ||
:clone.negative-locus/author | ?Clone | Negative_locus (2) | ||
:clone.negative-locus/locus | ?Clone | Negative_locus (1) | ||
:clone.outside-rearr/author | ?Clone | Outside_rearr (2) | ||
:clone.pmap/contig | ?Clone | pMap (1) | ||
:clone.pmap/pos1 | ?Clone | pMap (2) | ||
:clone.pmap/pos2 | ?Clone | pMap (3) | ||
:clone.positive-variation/author | ?Clone | Positive_variation (2) | ||
:condition/contained-in | ?Condition | Contained_in | ||
:contig/pmap | ?Contig | pMap | ||
:contig.pmap/start | ?Contig | pMap (1) | ||
:contig.pmap/stop | ?Contig | pMap (2) | ||
:database-field/remark | ?Database_field | Remark | ||
:do-term/broad | ?DO_term | Broad | Remove (Ranjana) | |
:do-term/reference | ?DO_term | Reference | Remove (Ranjana) | |
:do-term/version | ?DO_term | Version | Please keep, DO will introduce versioning (Ranjana) | |
:do-term/worm-disease-model | ?DO_term | Worm_disease_model | Remove (Ranjana) | |
:do-term.worm-disease-model/species | ?DO_term | Worm_disease_model (2) | Remove (Ranjana) | |
:do-term.worm-disease-model/text | ?DO_term | Worm_disease_model (1) | Remove (Ranjana) | |
:embl-dump-info/embl-reference | #EMBL_dump_info | EMBL_reference | ||
:embl-info/location | #EMBL_info | Location | ||
:embl-info/note | #EMBL_info | Note | ||
:embl-info/product | #EMBL_info | Product | ||
:expr-pattern/cds | ?Expr_pattern | CDS | Remove (Daniela) | |
:expr-pattern/cell | ?Expr_pattern | Cell | Remove (Daniela) | |
:expr-pattern/cell-group | ?Expr_pattern | Cell_group | Remove (Daniela) | |
:expr-pattern/construct | ?Expr_pattern | Construct | Populated in WS245 | |
:expr-pattern/pseudogene | ?Expr_pattern | Pseudogene | Remove (Daniela) | |
:expr-pattern.cell/cell | ?Expr_pattern | Cell (1) | Remove (Daniela) | |
:expr-pattern.cell-group/cell-group | ?Expr_pattern | Cell_group (1) | Remove (Daniela) | |
:expr-profile/species | ?Expr_profile | Species | ||
:expression-cluster/go-term | ?Expression_cluster | GO_term | ||
:expression-cluster/mass-spectrometry | ?Expression_cluster | Mass_spectrometry | ||
:expression-cluster/rnaseq | ?Expression_cluster | RNAseq | ||
:expression-cluster/sage-tag | ?Expression_cluster | SAGE_tag | ||
:expression-cluster/tiling-array | ?Expression_cluster | Tiling_array | ||
:expression-cluster.expr-pattern/expr-pattern | ?Expression_cluster | Expr_pattern (1) | ||
:expression-cluster.gene/text | ?Expression_cluster | Gene (2) | ||
:expression-cluster.sage-tag/sage-tag | ?Expression_cluster | SAGE_tag (1) | ||
:expression-cluster.sage-tag/text | ?Expression_cluster | SAGE_tag (2) | ||
:feature/annotation | ?Feature | Annotation | ||
:feature/associated-with-position-matrix | ?Feature | Associated_with_Position_Matrix | ||
:feature/associated-with-transposon | ?Feature | Associated_with_transposon | ||
:feature/associated-with-variation | ?Feature | Associated_with_variation | ||
:feature/defined-by-author | ?Feature | Defined_by_author | ||
:feature/strain | ?Feature | Strain | ||
:feature.associated-with-position-matrix/position-matrix | ?Feature | Associated_with_Position_Matrix (1) | ||
:feature.associated-with-transposon/transposon | ?Feature | Associated_with_transposon (1) | ||
:feature.associated-with-variation/variation | ?Feature | Associated_with_variation (1) | ||
:feature.score/text | ?Feature | Score (2) | ||
:gene/detailed-description | ?Gene | Detailed_description | We could remove this tag; it is no longer used for concise descriptions. kmva 2014-11-05 | |
:gene-cluster/database | ?Gene_cluster | Database | Remove? need to check with Michael P. and Kevin --Kyook (talk) 23:29, 12 November 2014 (UTC) | |
:gene-cluster/title | ?Gene_cluster | Title | Remove (--Kyook (talk) 23:29, 12 November 2014 (UTC)) | |
:gene-cluster.database/accession | ?Gene_cluster | Database (3) | ||
:gene-cluster.database/database | ?Gene_cluster | Database (1) | ||
:gene-cluster.database/field | ?Gene_cluster | Database (2) | ||
:gene.detailed-description/text | ?Gene | Detailed_description (1) | ||
:genetic-code/remark | ?Genetic_code | Remark | ||
:go-code/remark | ?GO_code | Remark | ||
:go-code.remark/text | ?GO_code | Remark (1) | Would like to keep this; I have a new GO_code file that uses this tag to hold a description of the GO_code. We could change to a more informative tag name, though. kmva 2014-11-05 | |
:go-term/name | ?GO_term | Name | It might actually be better to use this tag in place of the Term tag (and retire the Term tag). This would be more consistent with the tag name in the GO.obo file. kmva 2014-11-05 | |
:gr-condition/cell | #GR_condition | Cell | ||
:gr-condition/cell-group | #GR_condition | Cell_group | ||
:grid/a1-labelling | ?Grid | A1_labelling | ||
:grid/columns | ?Grid | Columns | ||
:grid/no-stagger | ?Grid | No_stagger | ||
:grid/size | ?Grid | Size | ||
:grid/xy-labelling | ?Grid | XY_labelling | ||
:grid-data/clone | ?Grid_data | Clone | ||
:grid-data/date | ?Grid_data | Date | ||
:grid-data/default-negative | ?Grid_data | Default_negative | ||
:grid-data/grid | ?Grid_data | Grid | ||
:grid-data/hybridizes-to | ?Grid_data | Hybridizes_to | ||
:grid-data/laboratory | ?Grid_data | Laboratory | ||
:grid-data/mapper | ?Grid_data | Mapper | ||
:grid-data/positive-product | ?Grid_data | Positive_product | ||
:grid-row/mixed | ?Grid_row | Mixed | ||
:grid.size/x | ?Grid | Size (1) | ||
:grid.size/y | ?Grid | Size (2) | ||
:grid.xy-labelling/x | ?Grid | XY_labelling (1) | ||
:grid.xy-labelling/y | ?Grid | XY_labelling (2) | ||
:homology-group/evidence | ?Homology_group | Evidence | ||
:homology-group/go-term | ?Homology_group | GO_term | ||
:homology-group/inparanoid-group | ?Homology_group | InParanoid_group | ||
:homology-type/nemnog | #Homology_type | nemNOG | ||
:homology-type/nog | #Homology_type | NOG | ||
:interaction/affinity-capture-ms | ?Interaction | Affinity_capture_MS | Data is in Caltech's curation database. kmva 2014-11-05 | |
:interaction/affinity-capture-rna | ?Interaction | Affinity_capture_RNA | No data yet, but will be used. kmva 2014-11-05 | |
:interaction/biochemical-activity | ?Interaction | Biochemical_activity | Data is in Caltech's curation database. kmva 2014-11-05 | |
:interaction/chromatin-immunoprecipitation | ?Interaction | Chromatin_immunoprecipitation | Data is in Caltech's curation database. kmva 2014-11-05 | |
:interaction/cocrystal-structure | ?Interaction | Cocrystal_structure | Data is in Caltech's curation database. kmva 2014-11-05 | |
:interaction/cofractionation | ?Interaction | Cofractionation | Data is in Caltech's curation database. kmva 2014-11-05 | |
:interaction/construct | ?Interaction | Construct | ||
:interaction/database | ?Interaction | Database | Data is in Caltech's curation database. kmva 2014-11-05 | |
:interaction/deviation-from-expectation | ?Interaction | Deviation_from_expectation | ||
:interaction/dnase-i-footprinting | ?Interaction | DNase_I_footprinting | ||
:interaction/far-western | ?Interaction | Far_western | Data is in Caltech's curation database. kmva 2014-11-05 | |
:interaction/fluorescence-resonance-energy-transfer | ?Interaction | Fluorescence_resonance_energy_transfer | Data is in Caltech's curation database. kmva 2014-11-05 | |
:interaction/from-company | ?Interaction | From_company | ||
:interaction/interactor-overlapping-protein | ?Interaction | Interactor_overlapping_protein | ||
:interaction/neutrality-function | ?Interaction | Neutrality_function | ||
:interaction/p-value | ?Interaction | P_value | ||
:interaction/protein-fragment-complementation-assay | ?Interaction | Protein_fragment_complementation_assay | Data is in Caltech's curation database. kmva 2014-11-05 | |
:interaction/protein-peptide | ?Interaction | Protein_peptide | Data is in Caltech's curation database. kmva 2014-11-05 | |
:interaction/protein-rna | ?Interaction | Protein_RNA | Data is in Caltech's curation database. kmva 2014-11-05 | |
:interaction/reconstituted-complex | ?Interaction | Reconstituted_complex | Data is in Caltech's curation database. kmva 2014-11-05 | |
:interaction/unaffiliated-construct | ?Interaction | Unaffiliated_construct | ||
:interaction.database/accession | ?Interaction | Database (3) | Data is in Caltech's curation database. kmva 2014-11-05 | |
:interaction.database/database | ?Interaction | Database (1) | Data is in Caltech's curation database. kmva 2014-11-05 | |
:interaction.database/field | ?Interaction | Database (2) | Data is in Caltech's curation database. kmva 2014-11-05 | |
:interaction.interactor-overlapping-protein/protein | ?Interaction | Interactor_overlapping_protein (1) | ||
:interactor-info/construct | #Interactor_info | Construct | ||
:interactor-info/inferred-automatically | #Interactor_info | Inferred_automatically | ||
:lab-location/freezer | #Lab_Location | Freezer | ||
:lab-location/liquidn2 | #Lab_Location | LiquidN2 | ||
:lab-location/minus70 | #Lab_Location | Minus70 | ||
:lab-location/remark | #Lab_Location | Remark | ||
:lab-location.remark/text | #Lab_Location | Remark (1) | ||
:laboratory/clean-address | ?Laboratory | Clean_address | ||
:lane/band | #Lane | Band | ||
:lane/band-lengths | #Lane | Band_Lengths | ||
:lane/bands | #Lane | Bands | ||
:lane.band/float | #Lane | Band (1) | ||
:lane.band/text | #Lane | Band (2) | ||
:library/database | ?Library | Database | ||
:library/description | ?Library | Description | ||
:library/life-stage | ?Library | Life_stage | ||
:library/species | ?Library | Species | ||
:library/strain | ?Library | Strain | ||
:library/tissue | ?Library | Tissue | ||
:library/vector | ?Library | Vector | ||
:library.database/accession | ?Library | Database (3) | ||
:library.database/database | ?Library | Database (1) | ||
:library.database/field | ?Library | Database (2) | ||
:life-stage/curated-by | ?Life_stage | Curated_by | ||
:locus/detection-method | ?Locus | Detection_method | ||
:locus/evidence | ?Locus | Evidence | ||
:locus/laboratory | ?Locus | Laboratory | ||
:locus/other-name | ?Locus | Other_name | ||
:locus/remark | ?Locus | Remark | ||
:locus/rflp | ?Locus | RFLP | ||
:locus/snp | ?Locus | SNP | ||
:locus/snp-assay | ?Locus | SNP_assay | ||
:locus/species | ?Locus | Species | ||
:locus/status | ?Locus | Status | ||
:locus/transposon-insertion | ?Locus | Transposon_insertion | ||
:locus/well-ordered | ?Locus | Well_ordered | ||
:locus.other-name/text | ?Locus | Other_name (1) | ||
:locus.remark/text | ?Locus | Remark (1) | ||
:locus.snp-assay/pcr-product | ?Locus | SNP_assay (1) | ||
:locus.snp-assay/text | ?Locus | SNP_assay (2) | ||
:map/author | ?Map | Author | ||
:map/embl-chromosome | ?Map | EMBL_chromosome | ||
:map/flipped | ?Map | Flipped | ||
:map/from-map | ?Map | From_map | ||
:map/includes | ?Map | Includes | ||
:map/map | ?Map | Map | ||
:map/no-cache | ?Map | No_cache | ||
:map/non-graphic | ?Map | Non_graphic | ||
:map/title | ?Map | Title | ||
:map/unit | ?Map | Unit | ||
:map-offset/relative | #Map_offset | Relative | ||
:map-position/multi-ends | #Map_position | Multi_Ends | ||
:map-position/multi-position | #Map_position | Multi_Position | ||
:map-position/with-clone | #Map_position | With_clone | ||
:map-position/with-locus | #Map_position | With_locus | ||
:map-position.multi-ends/max | #Map_position | Multi_Ends (2) | ||
:map-position.multi-ends/min | #Map_position | Multi_Ends (1) | ||
:map-position.multi-position/float | #Map_position | Multi_Position (1) | ||
:map-position.with-clone/clone | #Map_position | With_clone (1) | ||
:map-position.with-locus/locus | #Map_position | With_locus (1) | ||
:map.centre/max | ?Map | Centre (2) | ||
:map.map/map | ?Map | Map (1) | ||
:mass-spec-data/charge-state | #Mass_spec_data | Charge_state | ||
:mass-spec-data/deltacn | #Mass_spec_data | DeltaCN | ||
:mass-spec-data/sp-rank | #Mass_spec_data | Sp_rank | ||
:mass-spec-data/sp-score | #Mass_spec_data | Sp_score | ||
:mass-spec-data/xcorr | #Mass_spec_data | XCorr | ||
:mass-spec-experiment/anatomy-term | ?Mass_spec_experiment | Anatomy_term | ||
:mass-spec-experiment/author | ?Mass_spec_experiment | Author | ||
:mass-spec-experiment/cell-type | ?Mass_spec_experiment | Cell_type | ||
:mass-spec-experiment/false-discovery-rate | ?Mass_spec_experiment | False_discovery_rate | ||
:mass-spec-experiment/genotype | ?Mass_spec_experiment | Genotype | ||
:mass-spec-experiment/laboratory | ?Mass_spec_experiment | Laboratory | ||
:mass-spec-experiment/minimum-ion-proportion | ?Mass_spec_experiment | Minimum_ion_proportion | ||
:mass-spec-experiment/minimum-peptide-length | ?Mass_spec_experiment | Minimum_peptide_length | ||
:method/gene-assemble-method | ?Method | Gene_assemble_method | ||
:method/gf-3-cutoff | ?Method | GF_3_cutoff | ||
:method/gf-5-cutoff | ?Method | GF_5_cutoff | ||
:method/gf-atg-cutoff | ?Method | GF_ATG_cutoff | ||
:method/gf-range | ?Method | GF_range | ||
:method/max-mag | ?Method | Max_mag | ||
:method/min-mag | ?Method | Min_mag | ||
:method/score-by-histogram | ?Method | Score_by_histogram | ||
:method/score-by-offset | ?Method | Score_by_offset | ||
:method/symbol | ?Method | Symbol | ||
:method.gene-assemble-method/float | ?Method | Gene_assemble_method (2) | ||
:method.gene-assemble-method/method | ?Method | Gene_assemble_method (1) | ||
:method.intron-cost/min | ?Method | Intron_cost (3) | ||
:microarray-data/a-vs-b-log-ratio | #Microarray_data | A_vs_B_log_ratio | ||
:microarray-data/a-vs-b-sd | #Microarray_data | A_vs_B_SD | ||
:microarray-data/confidence-level | #Microarray_data | Confidence_level | ||
:microarray-data/p-value | #Microarray_data | P_value | ||
:microarray-results/remark | ?Microarray_results | Remark | ||
:microarray-results.remark/text | ?Microarray_results | Remark (1) | ||
:mixed-grid-row/clone | ?Mixed_grid_row | Clone | ||
:mixed-grid-row.clone/clone | ?Mixed_grid_row | Clone (1) | ||
:molecule/name | ?Molecule | Name | Remove --Kyook (talk) 23:29, 12 November 2014 (UTC) | |
:molecule/remark | ?Molecule | Remark | please keep --Kyook (talk) 23:29, 12 November 2014 (UTC) | |
:molecule.remark/text | ?Molecule | Remark (1) | please keep --Kyook (talk) 23:29, 12 November 2014 (UTC) | |
:motif/db-remark | ?Motif | DB_remark | ||
:motif/db-text | ?Motif | DB_text | ||
:motif/num-mismatch | ?Motif | Num_mismatch | ||
:motif/redundant | ?Motif | Redundant | ||
:motif.db-remark/text | ?Motif | DB_remark (1) | ||
:motif.go-term/go-code | ?Motif | GO_term (2) | ||
:movie/description | ?Movie | Description | Keep (Daniela) | |
:movie/variation | ?Movie | Variation | Keep (Daniela) | |
:oligo/gc | ?Oligo | GC | ||
:oligo/pairwise-scores | ?Oligo | Pairwise_scores | ||
:oligo/score | ?Oligo | Score | ||
:oligo/tm | ?Oligo | Tm | ||
:oligo-set/oligo | ?Oligo_set | Oligo | ||
:oligo-set/target-exons | ?Oligo_set | Target_exons | ||
:oligo-set.target-exons/end | ?Oligo_set | Target_exons (2) | ||
:oligo-set.target-exons/start | ?Oligo_set | Target_exons (1) | ||
:oligo.pairwise-scores/melting-temperature | ?Oligo | Pairwise_scores (3) | ||
:oligo.pairwise-scores/oligo | ?Oligo | Pairwise_scores (1) | ||
:oligo.pairwise-scores/score | ?Oligo | Pairwise_scores (2) | ||
:paper/directory | ?Paper | Directory | Could remove this tag. kmva 2014-11-05 | |
:paper/email | ?Paper | Could keep this? The intent was to use this if we wanted to actually include the text of an email as a paper reference. kmva 2014-11-05 | ||
:paper/original-timestamp | ?Paper | Original_timestamp | Not 100% certain, but I think we could remove this one. kmva 2014-11-05 | |
:paper/species | ?Paper | Species | Would like to keep this. kmva 2014-11-05 | |
:paper.species/species | ?Paper | Species (1) | Would like to keep this. kmva 2014-11-05 | |
:pcr-product/species | ?PCR_product | Species | ||
:pcr-product.oligo/int-b | ?PCR_product | Oligo (2) | ||
:pcr-product.oligo/int-c | ?PCR_product | Oligo (3) | ||
:person/affiliation | ?Person | Affiliation | ||
:person/postgresql-id | ?Person | PostgreSQL_id | ||
:person/publishes-as | ?Person | Publishes_as | ||
:phenotype/do-term | ?Phenotype | DO_term | ||
:phenotype/short-name | ?Phenotype | Short_name | ||
:phenotype-info/mixed | #Phenotype_info | Mixed | ||
:phenotype-info/not | #Phenotype_info | Not | ||
:phenotype.do-term/do-term | ?Phenotype | DO_term (1) | ||
:phenotype.go-term/go-code | ?Phenotype | GO_term (2) | ||
:phenotype.short-name/text | ?Phenotype | Short_name (1) | ||
:picture/evidence | ?Picture | Evidence | Remove (Daniela) | |
:picture/species | ?Picture | Species | Keep (Daniela) | |
:pos-neg-data.gene-2/variation | ?Pos_neg_data | Gene_2 (2) | ||
:pos-neg-data.locus-2/variation | ?Pos_neg_data | Locus_2 (2) | ||
:position-confidence/approximate | #Position_confidence | Approximate | ||
:position-confidence/exact | #Position_confidence | Exact | ||
:position-confidence/inferred-from-gps | #Position_confidence | Inferred_from_GPS | ||
:protein/brigpep | ?Protein | Brigpep | ||
:pseudogene/concise-description | ?Pseudogene | Concise_description | ||
:pseudogene/confidential-remark | ?Pseudogene | Confidential_remark | ||
:pseudogene/detailed-description | ?Pseudogene | Detailed_description | ||
:pseudogene/provisional-description | ?Pseudogene | Provisional_description | ||
:pseudogene.concise-description/text | ?Pseudogene | Concise_description (1) | ||
:pseudogene.detailed-description/text | ?Pseudogene | Detailed_description (1) | ||
:pseudogene.provisional-description/text | ?Pseudogene | Provisional_description (1) | ||
:rearrangement/by-other | ?Rearrangement | By_other | ||
:rearrangement/introgression | ?Rearrangement | Introgression | ||
:rearrangement/url | ?Rearrangement | URL | ||
:rearrangement.locus-inside/author | ?Rearrangement | Locus_inside (2) | ||
:rearrangement.locus-outside/author | ?Rearrangement | Locus_outside (2) | ||
:reconstruction/author | ?Reconstruction | Author | ||
:reconstruction/date | ?Reconstruction | Date | ||
:reconstruction/description | ?Reconstruction | Description | ||
:reconstruction/remark | ?Reconstruction | Remark | ||
:reconstruction.remark/text | ?Reconstruction | Remark (1) | ||
:reference/description | ?Reference | Description | ||
:reference/reference | ?Reference | Reference | ||
:reference/remark | ?Reference | Remark | ||
:reference/species | ?Reference | Species | ||
:reference.remark/text | ?Reference | Remark (1) | ||
:rnai/clone | ?RNAi | Clone | ||
:sage-data/confidence-level | #SAGE_data | Confidence_level | ||
:sage-data/number-of-experiments | #SAGE_data | Number_of_experiments | ||
:sage-data/sequence-quality | #SAGE_data | Sequence_quality | ||
:sage-data/significance | #SAGE_data | Significance | ||
:sage-data/standard-deviation | #SAGE_data | Standard_deviation | ||
:sage-experiment/remark | ?SAGE_experiment | Remark | ||
:sage-experiment/species | ?SAGE_experiment | Species | ||
:sage-experiment.remark/text | ?SAGE_experiment | Remark (1) | ||
:sage-tag/evidence | ?SAGE_tag | Evidence | ||
:sage-tag/predicted-cds | ?SAGE_tag | Predicted_CDS | ||
:sage-tag/pseudogene | ?SAGE_tag | Pseudogene | ||
:sage-tag/remark | ?SAGE_tag | Remark | ||
:sage-tag.predicted-cds/cds | ?SAGE_tag | Predicted_CDS (1) | ||
:sage-tag.pseudogene/pseudogene | ?SAGE_tag | Pseudogene (1) | ||
:sage-tag.remark/text | ?SAGE_tag | Remark (1) | ||
:sequence/agp-fragment | ?Sequence | AGP_fragment | ||
:sequence/anatomy-term | ?Sequence | Anatomy_term | ||
:sequence/archived | ?Sequence | Archived | ||
:sequence/briggsae-canonical | ?Sequence | Briggsae_canonical | ||
:sequence/clone-end-seq-read | ?Sequence | Clone_end_seq_read | ||
:sequence/confidential-remark | ?Sequence | Confidential_remark | ||
:sequence/contains-reads | ?Sequence | Contains_reads | ||
:sequence/crc64 | ?Sequence | CRC64 | ||
:sequence/est-consensus | ?Sequence | EST_consensus | ||
:sequence/flipped | ?Sequence | Flipped | ||
:sequence/from-database | ?Sequence | From_database | ||
:sequence/genomic | ?Sequence | Genomic | ||
:sequence/go-term | ?Sequence | GO_term | ||
:sequence/library-construction | ?Sequence | Library_construction | ||
:sequence/match-type | ?Sequence | Match_type | ||
:sequence/predicted-3 | ?Sequence | Predicted_3 | ||
:sequence/predicted-5 | ?Sequence | Predicted_5 | ||
:sequence/read-coverage | ?Sequence | Read_coverage | ||
:sequence/received | ?Sequence | Received | ||
:sequence/scrna | ?Sequence | scRNA | ||
:sequence/shotgun-complete | ?Sequence | Shotgun_complete | ||
:sequence/snorna | ?Sequence | snoRNA | ||
:sequence/source-exons | ?Sequence | Source_exons | ||
:sequence.agp-fragment/end | ?Sequence | AGP_fragment (3) | ||
:sequence.agp-fragment/sequence | ?Sequence | AGP_fragment (1) | ||
:sequence.agp-fragment/start | ?Sequence | AGP_fragment (2) | ||
:sequence.archived/datetype | ?Sequence | Archived (1) | ||
:sequence.archived/disk | ?Sequence | Archived (2) | ||
:sequence.date/comment | ?Sequence | Date (2) | ||
:sequence.from-database/database | ?Sequence | From_database (1) | ||
:sequence.from-database/version | ?Sequence | From_database (2) | ||
:sequence.gap-right/size | ?Sequence | Gap_right (1) | ||
:sequence.gap-right/text | ?Sequence | Gap_right (2) | ||
:sequence.go-term/go-code | ?Sequence | GO_term (2) | ||
:sequence.go-term/go-term | ?Sequence | GO_term (1) | ||
:sequence.oligo/int-b | ?Sequence | Oligo (2) | ||
:sequence.oligo/int-c | ?Sequence | Oligo (3) | ||
:sequence.oligo/method | ?Sequence | Oligo (4) | ||
:sequence.predicted-3/float | ?Sequence | Predicted_3 (4) | ||
:sequence.predicted-3/int-b | ?Sequence | Predicted_3 (2) | ||
:sequence.predicted-3/int-c | ?Sequence | Predicted_3 (3) | ||
:sequence.predicted-3/method | ?Sequence | Predicted_3 (1) | ||
:sequence.predicted-5/float | ?Sequence | Predicted_5 (4) | ||
:sequence.predicted-5/int-b | ?Sequence | Predicted_5 (2) | ||
:sequence.predicted-5/int-c | ?Sequence | Predicted_5 (3) | ||
:sequence.predicted-5/method | ?Sequence | Predicted_5 (1) | ||
:sequence.source-exons/end | ?Sequence | Source_exons (2) | ||
:sequence.source-exons/start | ?Sequence | Source_exons (1) | ||
:smap-info/align | #SMap_info | Align | ||
:smap-info/content | #SMap_info | Content | ||
:smap-info/max-mag | #SMap_info | Max_mag | ||
:smap-info/method | #SMap_info | Method | ||
:smap-info/min-mag | #SMap_info | Min_mag | ||
:smap-info/mismatch | #SMap_info | Mismatch | ||
:smap-info.align/child-pos | #SMap_info | Align (2) | ||
:smap-info.align/length | #SMap_info | Align (3) | ||
:smap-info.align/parent-pos | #SMap_info | Align (1) | ||
:so-term/derived-from | ?SO_term | Derived_from | ||
:species/g-species | ?Species | G_species | ||
:splice-confirmation/homology | #Splice_confirmation | Homology | ||
:splice-confirmation/mass-spec | #Splice_confirmation | Mass_spec | ||
:splice-confirmation/mrna | #Splice_confirmation | mRNA | ||
:splice-confirmation/ost | #Splice_confirmation | OST | ||
:splice-confirmation/rnaseq | #Splice_confirmation | RNASeq | ||
:splice-confirmation/rst | #Splice_confirmation | RST | ||
:splice-confirmation.rnaseq/analysis | #Splice_confirmation | RNASeq (1) | ||
:splice-confirmation.rnaseq/int | #Splice_confirmation | RNASeq (2) | ||
:strain/contact | ?Strain | Contact | ||
:strain/elevation | ?Strain | Elevation | ||
:strain/picture | ?Strain | Picture | ||
:strain.elevation/float | ?Strain | Elevation (1) | ||
:structure-data/hsqc | ?Structure_data | Hsqc | ||
:structure-data/in-pdb | ?Structure_data | In_pdb | ||
:structure-data/nmr-assigned | ?Structure_data | Nmr_assigned | ||
:structure-data/nmr-structure | ?Structure_data | Nmr_structure | ||
:structure-data/other | ?Structure_data | Other | ||
:structure-data/remark | ?Structure_data | Remark | ||
:structure-data/test-target | ?Structure_data | Test_target | ||
:structure-data.remark/text | ?Structure_data | Remark (1) | ||
:transcript/concise-description | ?Transcript | Concise_description | ||
:transcript/detailed-description | ?Transcript | Detailed_description | ||
:transcript/end-not-found | ?Transcript | End_not_found | ||
:transcript/go-term | ?Transcript | GO_term | ||
:transcript/mrna | ?Transcript | mRNA | ||
:transcript/snlrna | ?Transcript | snlRNA | ||
:transcript/start-not-found | ?Transcript | Start_not_found | ||
:transcript/strna | ?Transcript | stRNA | ||
:transcript.concise-description/text | ?Transcript | Concise_description (1) | ||
:transcript.detailed-description/text | ?Transcript | Detailed_description (1) | ||
:transcript.go-term/go-code | ?Transcript | GO_term (2) | ||
:transcript.go-term/go-term | ?Transcript | GO_term (1) | ||
:transcription-factor/species | ?Transcription_factor | Species | ||
:transgene/author | ?Transgene | Author | ||
:transgene/coinjection-other | ?Transgene | Coinjection_other | ||
:transgene/evidence | ?Transgene | Evidence | ||
:transgene/extrachromosomal | ?Transgene | Extrachromosomal | ||
:transgene/integrated-from | ?Transgene | Integrated_from | ||
:transposon/ltr-region | ?Transposon | LTR_region | ||
:transposon/pseudogene-child | ?Transposon | Pseudogene_child | ||
:transposon-family/db-annotation | ?Transposon_family | DB_annotation | ||
:transposon-family.db-annotation/database | ?Transposon_family | DB_annotation (1) | ||
:transposon-family.db-annotation/longtext | ?Transposon_family | DB_annotation (2) | ||
:transposon.ltr-region/end | ?Transposon | LTR_region (2) | ||
:transposon.ltr-region/start | ?Transposon | LTR_region (1) | ||
:transposon.pseudogene-child/end | ?Transposon | Pseudogene_child (3) | ||
:transposon.pseudogene-child/pseudogene | ?Transposon | Pseudogene_child (1) | ||
:transposon.pseudogene-child/start | ?Transposon | Pseudogene_child (2) | ||
:tree/bootstrap-factor | ?Tree | Bootstrap_Factor | ||
:tree/descriptive-labels | ?Tree | Descriptive_Labels | ||
:tree/hide-bootstraps | ?Tree | Hide_Bootstraps | ||
:tree/no-header | ?Tree | No_Header | ||
:tree/normalization | ?Tree | Normalization | ||
:treenode/bootstrap | ?TreeNode | Bootstrap | ||
:treenode/distance | ?TreeNode | Distance | ||
:treenode/hide-bootstraps | ?TreeNode | Hide_Bootstraps | ||
:treenode/show-bootstrap | ?TreeNode | Show_Bootstrap | ||
:treenode/taxon | ?TreeNode | Taxon | ||
:treenode/xid | ?TreeNode | Id | ||
:variation/amber-uag | ?Variation | Amber_UAG | ||
:variation/dead | ?Variation | Dead | ||
:variation/derived-from-construct | ?Variation | Derived_from_construct | ||
:variation/derived-from-variation | ?Variation | Derived_from_variation | ||
:variation/engineered-allele | ?Variation | Engineered_allele | ||
:variation/expr-pattern | ?Variation | Expr_pattern | ||
:variation/hme0-mating-not-successful | ?Variation | HME0_Mating_not_successful | Curated through variation phenotype, need to discuss syncing or transferring data, data is not being show on website --Kyook (talk) 23:42, 12 November 2014 (UTC) | |
:variation/hme1-mating-rarely-successful | ?Variation | HME1_Mating_rarely_successful | Curated through variation phenotype, need to discuss syncing or transferring data, data is not being show on website --Kyook (talk) 23:42, 12 November 2014 (UTC) | |
:variation/hme2-mating-usually-successful | ?Variation | HME2_Mating_usually_successful | Curated through variation phenotype, need to discuss syncing or transferring data, data is not being show on website --Kyook (talk) 23:42, 12 November 2014 (UTC) | |
:variation/hme3-mating-always-successful | ?Variation | HME3_Mating_always_successful | Curated through variation phenotype, need to discuss syncing or transferring data, data is not being show on website --Kyook (talk) 23:42, 12 November 2014 (UTC) | |
:variation/inversion | ?Variation | Inversion | ||
:variation/linked-to | ?Variation | Linked_to | ||
:variation/me0-mating-not-successful | ?Variation | ME0_Mating_not_successful | Curated through variation phenotype, need to discuss syncing or transferring data, data is not being show on website --Kyook (talk) 23:42, 12 November 2014 (UTC) | |
:variation/me1-mating-rarely-successful | ?Variation | ME1_Mating_rarely_successful | Curated through variation phenotype, need to discuss syncing or transferring data, data is not being show on website --Kyook (talk) 23:42, 12 November 2014 (UTC) | |
:variation/me2-mating-usually-successful | ?Variation | ME2_Mating_usually_successful | Curated through variation phenotype, need to discuss syncing or transferring data, data is not being show on website --Kyook (talk) 23:42, 12 November 2014 (UTC) | |
:variation/me3-mating-always-successful | ?Variation | ME3_Mating_always_successful | Curated through variation phenotype, need to discuss syncing or transferring data, data is not being show on website --Kyook (talk) 23:42, 12 November 2014 (UTC) | |
:variation/missense | ?Variation | Missense | ||
:variation/nature-of-variation | ?Variation | Nature_of_variation | ||
:variation/ochre-uaa | ?Variation | Ochre_UAA | ||
:variation/opal-uga | ?Variation | Opal_UGA | ||
:variation/phenotype-remark | ?Variation | Phenotype_remark | Curated through phenotype_info, not sure this is needed here --Kyook (talk) 23:42, 12 November 2014 (UTC) | |
:variation/production-method | ?Variation | Production_method | ||
:variation/readthrough | ?Variation | Readthrough | ||
:variation/silent | ?Variation | Silent | ||
:variation/split-into | ?Variation | Split_into | ||
:variation/text | ?Variation | text | ||
:variation/unique | ?Variation | Unique | ||
:variation.amber-uag/text | ?Variation | Amber_UAG (1) | ||
:variation.expr-pattern/expr-pattern | ?Variation | Expr_pattern (1) | ||
:variation.missense/text | ?Variation | Missense (1) | ||
:variation.ochre-uaa/text | ?Variation | Ochre_UAA (1) | ||
:variation.opal-uga/text | ?Variation | Opal_UGA (1) | ||
:variation.phenotype-remark/text | ?Variation | Phenotype_remark (1) | Curated through phenotype_info, not sure this is needed here --Kyook (talk) 23:42, 12 November 2014 (UTC) | |
:variation.readthrough/text | ?Variation | Readthrough (1) | ||
:variation.silent/text | ?Variation | Silent (1) | ||
:wbprocess/do-term | ?WBProcess | DO_term | please leave for now --Kyook (talk) 23:42, 12 November 2014 (UTC) | |
:wbprocess/historical-gene | ?WBProcess | Historical_gene | please leave for now --Kyook (talk) 23:42, 12 November 2014 (UTC) | |
:wbprocess/marker-construct | ?WBProcess | Marker_construct | please leave for now --Kyook (talk) 23:42, 12 November 2014 (UTC) | |
:wbprocess/movie | ?WBProcess | Movie | please leave for now --Kyook (talk) 23:42, 12 November 2014 (UTC) | |
:wbprocess/name | ?WBProcess | Name | please leave for now --Kyook (talk) 23:42, 12 November 2014 (UTC) | |
:wbprocess/picture | ?WBProcess | Picture | please leave for now --Kyook (talk) 23:42, 12 November 2014 (UTC) | |
:wbprocess/process-term | ?WBProcess | Process_term | please leave for now --Kyook (talk) 23:42, 12 November 2014 (UTC) | |
:wbprocess.do-term/do-term | ?WBProcess | DO_term (1) | please leave for now --Kyook (talk) 23:42, 12 November 2014 (UTC) | |
:wbprocess.historical-gene/gene | ?WBProcess | Historical_gene (1) | please leave for now --Kyook (talk) 23:42, 12 November 2014 (UTC) | |
:wbprocess.movie/movie | ?WBProcess | Movie (1) | please leave for now --Kyook (talk) 23:42, 12 November 2014 (UTC) | |
:wbprocess.picture/picture | ?WBProcess | Picture (1) | please leave for now --Kyook (talk) 23:42, 12 November 2014 (UTC) |