Difference between revisions of "WormBase-Caltech Weekly Calls"
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=== Updates on Alaska === | === Updates on Alaska === | ||
+ | |||
+ | ==Noctua GO-CAM updates== | ||
+ | *Noctua is a production tool available for annotations | ||
+ | *Create as many interconnected models and make available for curators is the ongoing goal | ||
+ | *React models are in the process of being imported | ||
+ | *Real time validation messages as curation is being done is being worked on | ||
+ | *Kimberly will send out the details for logging into Noctua |
Revision as of 18:37, 12 March 2020
Contents
Previous Years
GoToMeeting link: https://www.gotomeet.me/wormbase1
2020 Meetings
March 5, 2020
WormBase curation
- Tim Schedl: WB needs to do more curation for phenotype and variation
- Doing community curation, but not fast enough
- Would like to work on more automation; e.g. having Textpresso return all sentences mentioning an allele in papers that are predicted to have phenotype data
Alaksa
- Joesph may be able to meet with Raymond
- How can the tool be maintained? If it can't it needs to be pulled
Single cell expression tool
- Tool is here: http://de.wormcells.com/
- What do we need to consider for pulling into WormBase?
- Where does the data sit and how does the tool access it? Can we integrate the data more into WormBase (e.g. local curation databases)?
- Would want it to be in sync with WormBase releases
- May not need to reprocess with every release with current (small-ish) data set
- Fully integrated tool versus an embedded tool?
Name service updates
- For now we will stick to the CGIs that Juancarlos has built for variations and strains
- Juancarlos can discuss with Matt R. and Sibyl the possibility of integrating API requests to the Name service into a CGI form for the OA
March 12, 2020
Storing invalid/avoided WBPersons and email addresses in Postgres
- Currently Chris has been maintaining (on Google sheets) a list of papers, people, and email addresses to omit from future WormBase outreach requests
- Valerio would like to add these to Postgres to keep a more central repository of them
- Chris would still like to be able to readily update/edit the content of those lists
Updates on Alaska
Noctua GO-CAM updates
- Noctua is a production tool available for annotations
- Create as many interconnected models and make available for curators is the ongoing goal
- React models are in the process of being imported
- Real time validation messages as curation is being done is being worked on
- Kimberly will send out the details for logging into Noctua