Difference between revisions of "WormBase-Caltech Weekly Calls"
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*** RNASeq tools | *** RNASeq tools | ||
** Phenotype community curation | ** Phenotype community curation | ||
+ | *** Chris will send Paul numbers on: top community curators, overall stats (number of annotations, papers, curators) | ||
** Author First Pass | ** Author First Pass | ||
** Micropublication | ** Micropublication | ||
+ | |||
+ | === SGD SAB === | ||
+ | * Paul attended | ||
+ | * Alliance publicity was discussed | ||
+ | * SAB likes the Alliance orthology features |
Revision as of 18:22, 13 June 2019
Contents
Previous Years
GoToMeeting link: https://www.gotomeet.me/wormbase1
2019 Meetings
June 6, 2019
New SObA graphs
- May put graphs within existing widgets, but don't need to rush to get that ready for IWM
Phenotype association file format
- May be best to leave the format as is
- There are problems; paper IDs keep switching columns
- Would need to revisit the reasoning for why we do it that way
- When will the Alliance produce a similar/replacement file? Not sure
Phenotype requests
- Sent out 1140 emails on May 30
- Since have received 374 annotations from 54 papers (42 requested, 12 additional)
- 21 papers flagged as not having phenotypes
- Of 1140 papers emailed about, 35 emails bounced, and have received some flagging or curation on 63 (63/1105 = ~6% response rate), in first week
June 13, 2019
IWM
- Coordinating transportation of swag boxes to Pauley Pavilion
- Workshop on Saturday June 22, from 1pm to 2:30pm
- Saturday morning micropublication breakfast 7:30 - 8:30am
- Workshop
- Presenters: it may be best to present as use cases rather than a research project
- Chris will cover SimpleMine for Wen
- Chris: won't do live demo; only screenshots, maybe some video
- Paul's lab will do marathon bibs to show lab affiliation and graphical abstract
- Paul's talk
- Cover Alliance
- New features?
- SObA (for new data)
- Complete for protein-protein interactions
- RNASeq tools
- Phenotype community curation
- Chris will send Paul numbers on: top community curators, overall stats (number of annotations, papers, curators)
- Author First Pass
- Micropublication
SGD SAB
- Paul attended
- Alliance publicity was discussed
- SAB likes the Alliance orthology features