Difference between revisions of "WBConfCall 2015.08.06-Agenda and Minutes"
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** staging ~ 1st of December | ** staging ~ 1st of December | ||
** live ~ early January | ** live ~ early January | ||
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+ | ==WormMart End of Service== | ||
+ | * will retire with WS251 | ||
== Gene Class Categories == | == Gene Class Categories == |
Revision as of 15:59, 6 August 2015
Contents
Agenda
Intermine Status Update (Paulo Nuin and Sibyl)
Slides: http://wiki.wormbase.org/images/WormMine-v2.pdf
WS250
- news items for the release letter
- new worm: C.elegans (hawaii strain)
- will be used as reference release for other sites (EG, etc.)
Function vs Mutant
- Function vs Mutant Phenotype Gene Classes - Submissions to NCBI and EBI
- see email thread: Function vs. mutant phenotype gene classes
- categorise the gene classes
WS251 build dates
- Models freeze, data upload
WormMart End of Service
Now is time to unplug?
Minutes
Intermine
- Paolo (Alberta Health Services)
- runs off AWS
- total 1 week of building time first time (3/couple days for later attempts after optimisations)
- ~180 GB
- currently WS249 / will be updated to WS250 and the new intermine version for the WS250 release
WS250 / Hawaii
- will show up on the Genome Browsers
- with mapped gene models from N2
WS251 dates
- seems fine
- models 17th of September
- upload 2nd of October
- FTP 30th of October
- staging ~ 1st of December
- live ~ early January
WormMart End of Service
- will retire with WS251