Difference between revisions of "User Guide for Curators"
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*Instructions on what papers to run through the CCC search and how often to search | *Instructions on what papers to run through the CCC search and how often to search | ||
*Any filtering steps, e.g. filter against current GAF, filter after Support Vector Machine data type classification | *Any filtering steps, e.g. filter against current GAF, filter after Support Vector Machine data type classification | ||
| + | |||
*A gpi (gene product information) file as specified by the GOC: [http://wiki.geneontology.org/index.php/Final_GPAD_and_GPI_file_format gpad and gpi file format specifications]. This allows us to map all gene products mentions in a paper to a MOD identifier and to a UniProtKB identifier so we can send annotations via web services to UniProt's Protein2GO tool. | *A gpi (gene product information) file as specified by the GOC: [http://wiki.geneontology.org/index.php/Final_GPAD_and_GPI_file_format gpad and gpi file format specifications]. This allows us to map all gene products mentions in a paper to a MOD identifier and to a UniProtKB identifier so we can send annotations via web services to UniProt's Protein2GO tool. | ||
Revision as of 21:08, 8 August 2013
User Guide for Textpresso for CCC Form
Where to Find the Form
- The form is currently located at:
http://mangolassi.caltech.edu/~azurebrd/cgi-bin/forms/ccc/ccc.cgi
- Once we've finished initial testing, the form will be transferred over the our production server.
What We Need from Groups Using the Form
- Instructions on what papers to run through the CCC search and how often to search
- Any filtering steps, e.g. filter against current GAF, filter after Support Vector Machine data type classification
- A gpi (gene product information) file as specified by the GOC: gpad and gpi file format specifications. This allows us to map all gene products mentions in a paper to a MOD identifier and to a UniProtKB identifier so we can send annotations via web services to UniProt's Protein2GO tool.
