Difference between revisions of "Gene Ontology"
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− | == Semi- | + | Gene Ontology curation at WormBase is performed through several different pipelines: |
+ | |||
+ | 1. Manual curation of the literature | ||
+ | 2. Semi-automated, Textpresso-based curation of Cellular Component and Molecular Function | ||
+ | 3. Phenotype2GO mappings for Biological Process curation (both VariationPhenotype2GO and RNAiPhenotype2GO) | ||
+ | 4. InterPro2GO mappings for sequence-based IEA annotations | ||
+ | 5. Reference Genome inferential annotations | ||
+ | |||
+ | == Semi-automated curation == | ||
*CCC - GO Cellular Component Curation using Textpresso | *CCC - GO Cellular Component Curation using Textpresso | ||
#[[dictyBase]] | #[[dictyBase]] | ||
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#[[TAIR]] | #[[TAIR]] | ||
#[[WormBase]] | #[[WormBase]] | ||
+ | |||
+ | *MFC - GO Molecular Function Curation using Textpresso | ||
== Phenotype2GO pipeline == | == Phenotype2GO pipeline == |
Revision as of 16:26, 20 November 2009
Gene Ontology curation at WormBase is performed through several different pipelines:
1. Manual curation of the literature 2. Semi-automated, Textpresso-based curation of Cellular Component and Molecular Function 3. Phenotype2GO mappings for Biological Process curation (both VariationPhenotype2GO and RNAiPhenotype2GO) 4. InterPro2GO mappings for sequence-based IEA annotations 5. Reference Genome inferential annotations
Semi-automated curation
- CCC - GO Cellular Component Curation using Textpresso
- MFC - GO Molecular Function Curation using Textpresso
Phenotype2GO pipeline
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