Difference between revisions of "WormBase SAB Meeting"
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=== 15:45 - 17:30 Curation Continued and Other topics === | === 15:45 - 17:30 Curation Continued and Other topics === | ||
− | ** | + | * Transcriptional Networks: Gene expression and regulation: Transcriptional Networks (Daniela 10; Xioadong 30) |
− | + | * Human Relevance - Orthologies, Disease and Drugs (10) | |
+ | |||
* Revisiting tools with respect to Community Annotation (40) | * Revisiting tools with respect to Community Annotation (40) | ||
** Gene models (Kevin; 5 mins) | ** Gene models (Kevin; 5 mins) |
Revision as of 18:30, 24 January 2013
WormBase_Consortium Scientific Advisory Board Meeting
California Institute of Technology, January 27-29, 2013
Contents
- 1 Advisors list
- 2 Sunday 27th Jan – Pre-Meeting (WormBase central)
- 3 Monday 28th Jan
- 3.1 9:00 - 9:15 Overview
- 3.2 9:15 - 10:30 Website / User interface
- 3.3 10:30 - 10:45 BREAK
- 3.4 10:45 - 12:15 Sequence analysis and curation
- 3.5 12:15 - 13:30 LUNCH
- 3.6 13:30 - 15:30 Literature curation
- 3.7 15:30 - 15:45 BREAK
- 3.8 15:45 - 17:30 Curation Continued and Other topics
- 3.9 17:30 - Drinks and Dinner
- 4 Tuesday 29th Jan
- 5 Prior Meetings
Advisors list
Sunday 27th Jan – Pre-Meeting (WormBase central)
(Advisory Board not required to attend this session) Kerckhoff Room 101 : 1:30pm
- WormBase ParaSite
- Revive GFF3 production/testing
- Representation of multiple assemblies for a single species (on web-site and FTP site)
- Mechanism to stage/review changes to static content without immediately publishing it to live site
- Future web-site features
- Incremental updates
- variation tracks
- Data that we produce that cannot currently be viewed on web-site
- Comparative genomics (multiple alignments, gene trees)
Monday 28th Jan
9:00 - 9:15 Overview
- Introduction: Where we are, grant status, etc - (Paul Sternberg; 15 min)
9:15 - 10:30 Website / User interface
- Site introduction; usage; web team accomplishments; objectives and milestones. (Todd; 20 minutes)
- Tour of the new website (Abby; 20 minutes)
- Intermine introduction, status, and goals (JD; 15 minutes)
10:30 - 10:45 BREAK
10:45 - 12:15 Sequence analysis and curation
- Coping with the deluge of nematode sequence data (Kevin; 20 mins)
- Sequence curation - current status and future plans (Paul; 15 mins)
- Transcriptomics data in WormBase
- RNASeq alignment and annotation pipeline (Gary W; 10 mins)
- SPELL (Wen; 10 mins)
- Annotation of Brugia malayi - a pilot study for future parasitologist community collaborations (Michael; 15-20 mins)
12:15 - 13:30 LUNCH
Morgan Library (second floor of Kerckhoff)
13:30 - 15:30 Literature curation
- Literature curation workflow and tools (Chris, 30)
- Interactions (15)
- Discussion of Integrated Phenotype Curation (alleles, RNAi, transgenes, interactions, GO, cell function (10)
15:30 - 15:45 BREAK
15:45 - 17:30 Curation Continued and Other topics
- Transcriptional Networks: Gene expression and regulation: Transcriptional Networks (Daniela 10; Xioadong 30)
- Human Relevance - Orthologies, Disease and Drugs (10)
- Revisiting tools with respect to Community Annotation (40)
- Gene models (Kevin; 5 mins)
- Plans for retirement of the Acedb (Kevin/Todd; 15 mins)
- Biological data for other species,
- Concise descriptions [Kimberly, Ranjana]
17:30 - Drinks and Dinner
Morgan Library