Difference between revisions of "WBConfCall 2012.06.07-Agenda and Minutes"
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1) (Chris) I'd like to add the following tags to the main ?Interaction model: | 1) (Chris) I'd like to add the following tags to the main ?Interaction model: | ||
+ | |||
+ | <pre> | ||
Unaffiliated_variation ?Variation | Unaffiliated_variation ?Variation | ||
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Unaffiliated_expr_pattern ?Expr_pattern | Unaffiliated_expr_pattern ?Expr_pattern | ||
+ | </pre> | ||
2) (Chris) I'd like to add Rearrangement as a subtag of the "Interactor" tag as such: | 2) (Chris) I'd like to add Rearrangement as a subtag of the "Interactor" tag as such: | ||
+ | |||
+ | <pre> | ||
Interactor Rearrangement ?Rearrangement #Interactor_info | Interactor Rearrangement ?Rearrangement #Interactor_info | ||
+ | </pre> | ||
3) (Chris) I'd like to add two tags to the #Interactor_info hash: | 3) (Chris) I'd like to add two tags to the #Interactor_info hash: | ||
+ | |||
+ | <pre> | ||
Intragenic_effector_variation ?Variation XREF Interactor | Intragenic_effector_variation ?Variation XREF Interactor | ||
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Intragenic_affected_variation ?Variation XREF Interactor | Intragenic_affected_variation ?Variation XREF Interactor | ||
+ | </pre> | ||
4) (Chris) Can we make "PCR_interactor" and "Sequence_interactor" in the ?Interaction | 4) (Chris) Can we make "PCR_interactor" and "Sequence_interactor" in the ?Interaction | ||
model NOT unique? Right now they are, and this is posing problems (data is | model NOT unique? Right now they are, and this is posing problems (data is | ||
being suppressed/overwritten that shouldn't be). -- from Chris | being suppressed/overwritten that shouldn't be). -- from Chris | ||
+ | |||
+ | So, go from: | ||
+ | |||
+ | <pre> | ||
+ | |||
+ | PCR_interactor UNIQUE ?PCR_product #Interactor_info | ||
+ | |||
+ | Sequence_interactor UNIQUE ?Sequence #Interactor_info | ||
+ | |||
+ | </pre> | ||
+ | |||
+ | to... | ||
+ | |||
+ | <pre> | ||
+ | |||
+ | PCR_interactor ?PCR_product #Interactor_info | ||
+ | |||
+ | Sequence_interactor ?Sequence #Interactor_info | ||
+ | |||
+ | </pre> | ||
== Anatomy_term Model == | == Anatomy_term Model == |
Revision as of 18:16, 6 June 2012
Contents
Agenda
Models Proposals
Interaction and #Interactor_info Model
1) (Chris) I'd like to add the following tags to the main ?Interaction model:
Unaffiliated_variation ?Variation Unaffiliated_transgene ?Transgene Unaffiliated_antibody ?Antibody Unaffiliated_expr_pattern ?Expr_pattern
2) (Chris) I'd like to add Rearrangement as a subtag of the "Interactor" tag as such:
Interactor Rearrangement ?Rearrangement #Interactor_info
3) (Chris) I'd like to add two tags to the #Interactor_info hash:
Intragenic_effector_variation ?Variation XREF Interactor Intragenic_affected_variation ?Variation XREF Interactor
4) (Chris) Can we make "PCR_interactor" and "Sequence_interactor" in the ?Interaction model NOT unique? Right now they are, and this is posing problems (data is being suppressed/overwritten that shouldn't be). -- from Chris
So, go from:
PCR_interactor UNIQUE ?PCR_product #Interactor_info Sequence_interactor UNIQUE ?Sequence #Interactor_info
to...
PCR_interactor ?PCR_product #Interactor_info Sequence_interactor ?Sequence #Interactor_info
Anatomy_term Model
raymond proposes adding four sub tags to ?Anatomy_term model
?Anatomy_term
Child Cell_c ?Anatomy_term XREF Cell_p XUNION_OF_c ?Anatomy_term XREF XUNION_OF_p Parent Cell_p ?Anatomy_term XREF Cell_c XUNION_OF_p ?Anatomy_term XREF XUNION_OF_c
the Cell_c/p tags are used to represent parent/child developmental lineage relationship between cells. the XUNION_c/p tags are for anatomy ontology to represent a specific uncertain type of lineage relationship (among nuclei). e.g. "AVFL nucleus" develops from ("P1.aaaa nucleus" XOR "W.aaa nucleus").