Difference between revisions of "WormBase Model:Transposon"
From WormBaseWiki
Jump to navigationJump to search (Created page with '__TOC__ WormBase Models == Curator Comments/Description == == Model == <pre> </pre> == Proposed Changes ==') |
|||
Line 11: | Line 11: | ||
== Model == | == Model == | ||
<pre> | <pre> | ||
+ | /////////////////////////////////////////////////////////////////////////// | ||
+ | // | ||
+ | // ?Transposon class [020128 dl] | ||
+ | // | ||
+ | /////////////////////////////////////////////////////////////////////////// | ||
+ | |||
+ | |||
+ | ?Transposon Evidence #Evidence | ||
+ | SMap S_parent UNIQUE Sequence UNIQUE ?Sequence XREF Transposon | ||
+ | Structure S_child CDS_child ?CDS XREF Transposon UNIQUE Int UNIQUE Int #SMap_info // Transposon_CDSs will now link to parent Transposons ar2 02-DEC-05 | ||
+ | Pseudogene_child ?Pseudogene XREF Transposon UNIQUE Int UNIQUE Int #SMap_info | ||
+ | LTR_region Int UNIQUE Int | ||
+ | Origin Species UNIQUE ?Species | ||
+ | From_laboratory UNIQUE ?Laboratory | ||
+ | Member_of ?Transposon_family XREF Family_members | ||
+ | Old_Name ?Text #Evidence //to store old Transposon name | ||
+ | Copy_status UNIQUE Full #Evidence //track if the transposon is essentially complete or a fragment. | ||
+ | Partial #Evidence | ||
+ | Visible Remark ?Text #Evidence | ||
+ | Associated_feature ?Feature XREF Associated_with_transposon #Evidence | ||
+ | Method UNIQUE ?Method | ||
</pre> | </pre> | ||
== Proposed Changes == | == Proposed Changes == | ||
+ | ==Unused tags== | ||
+ | Evidence | ||
+ | |||
+ | Associated_feature | ||
+ | |||
+ | LTR_region |
Latest revision as of 09:51, 5 October 2010
Curator Comments/Description
Model
/////////////////////////////////////////////////////////////////////////// // // ?Transposon class [020128 dl] // /////////////////////////////////////////////////////////////////////////// ?Transposon Evidence #Evidence SMap S_parent UNIQUE Sequence UNIQUE ?Sequence XREF Transposon Structure S_child CDS_child ?CDS XREF Transposon UNIQUE Int UNIQUE Int #SMap_info // Transposon_CDSs will now link to parent Transposons ar2 02-DEC-05 Pseudogene_child ?Pseudogene XREF Transposon UNIQUE Int UNIQUE Int #SMap_info LTR_region Int UNIQUE Int Origin Species UNIQUE ?Species From_laboratory UNIQUE ?Laboratory Member_of ?Transposon_family XREF Family_members Old_Name ?Text #Evidence //to store old Transposon name Copy_status UNIQUE Full #Evidence //track if the transposon is essentially complete or a fragment. Partial #Evidence Visible Remark ?Text #Evidence Associated_feature ?Feature XREF Associated_with_transposon #Evidence Method UNIQUE ?Method
Proposed Changes
Unused tags
Evidence
Associated_feature
LTR_region