Difference between revisions of "WBConfCall 2016.06.02-Agenda and Minutes"
From WormBaseWiki
Jump to navigationJump to searchm (→Agenda) |
|||
(9 intermediate revisions by 2 users not shown) | |||
Line 1: | Line 1: | ||
= Agenda = | = Agenda = | ||
+ | Chair: Gary Williams | ||
+ | |||
== WS255 models == | == WS255 models == | ||
Line 20: | Line 22: | ||
== Open Issues == | == Open Issues == | ||
− | |||
* [https://github.com/WormBase/website/issues/4856 GBrowse mouseover] | * [https://github.com/WormBase/website/issues/4856 GBrowse mouseover] | ||
= Minutes = | = Minutes = | ||
+ | |||
+ | == Model Changes == | ||
+ | |||
+ | * Paul described the model changes - these are both simple. | ||
+ | * There were no problems found with these. | ||
+ | |||
+ | === Variations in Human and Worm === | ||
+ | |||
+ | * Ranjana said that Tim Schedl has asked about the status of modelling the same variation in Human and Worm. | ||
+ | * Kevin is working on this in conjunction with Sibyl who is developing a viewer. | ||
+ | * Karen raised the possibility of manual curation being required. This would require further model changes and would be a large task. | ||
+ | * It was felt that further discussion of this should wait until Kevin is back. | ||
+ | * Sibyl said that she would share her work on the viewer with anyone who wanted to see what it looks like. | ||
+ | |||
+ | === WS253 === | ||
+ | |||
+ | * Raymond wanted to know when this would go live because he has already updated the Ontology Browser. | ||
+ | * Todd said that is was delayed by a few days. | ||
+ | |||
+ | === Datomic === | ||
+ | |||
+ | * Chris is interested in doing some Datomic queries to learn more about it. He wanted to know if there was an equivalent of the ACE models file. | ||
+ | * There is an annotated Models file and a lisp-like file giving details of the tag-names etc. Matt will share the URL for these on the staff mailing list. | ||
+ | |||
+ | |||
+ | === Simple Mine === | ||
+ | |||
+ | * Raymond asked if anyone had objections to a simple gene data mining tool. | ||
+ | * Nobody objected. | ||
+ | * This will be based on [http://tazendra.caltech.edu/~azurebrd/cgi-bin/forms/simplemine.cgi FraqMine]. | ||
+ | * Raymond will start a GitHub ticket for people to discuss this project. | ||
+ | |||
+ | === TAGC meeting === | ||
+ | |||
+ | * Todd wanted to know how large the book of the meeting was. | ||
+ | * It is at least 22 pages - could be more, but less than 30. |
Latest revision as of 17:41, 2 June 2016
Contents
Agenda
Chair: Gary Williams
WS255 models
Freeze date 10th June
Proposals so far:
Chris
Additional level of data capture within the Interaction model for Physical Interactions.
?Interaction Interaction_type Physical Protein_protein Protein_DNA Protein_RNA
Mary Ann
Variation, additional Production_method.
Origin Production_method MosDEL
Open Issues
Minutes
Model Changes
- Paul described the model changes - these are both simple.
- There were no problems found with these.
Variations in Human and Worm
- Ranjana said that Tim Schedl has asked about the status of modelling the same variation in Human and Worm.
- Kevin is working on this in conjunction with Sibyl who is developing a viewer.
- Karen raised the possibility of manual curation being required. This would require further model changes and would be a large task.
- It was felt that further discussion of this should wait until Kevin is back.
- Sibyl said that she would share her work on the viewer with anyone who wanted to see what it looks like.
WS253
- Raymond wanted to know when this would go live because he has already updated the Ontology Browser.
- Todd said that is was delayed by a few days.
Datomic
- Chris is interested in doing some Datomic queries to learn more about it. He wanted to know if there was an equivalent of the ACE models file.
- There is an annotated Models file and a lisp-like file giving details of the tag-names etc. Matt will share the URL for these on the staff mailing list.
Simple Mine
- Raymond asked if anyone had objections to a simple gene data mining tool.
- Nobody objected.
- This will be based on FraqMine.
- Raymond will start a GitHub ticket for people to discuss this project.
TAGC meeting
- Todd wanted to know how large the book of the meeting was.
- It is at least 22 pages - could be more, but less than 30.