Difference between revisions of "WBConfCall 2015.09.03-Agenda and Minutes"
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== Datomic Progress == | == Datomic Progress == | ||
− | Paul | + | * Paul and Gary: porting, perl scripts for querying datomic |
− | Gary: porting, perl scripts for querying datomic | + | * Juancarlos: finished working through documentation |
− | Juancarlos: finished working through documentation | + | * Adam: |
− | Adam: | + | ** Method for provisioning machines with Datomic, website, etc. |
− | * Method for provisioning machines with Datomic, website, etc. | + | ** Using Docker to be able to quickly deploy going forward. |
− | * Using Docker to be able to quickly deploy going forward. | + | ** Makes future development much easier, good error reporting |
− | * Makes future development much easier, good error reporting | ||
− | Genetomic / curation database | + | == Genetomic / curation database == |
− | * | + | * TH: Is the genetomic instance in production? |
+ | * TD: Not yet in production but close; requires input from Mary Ann and others. | ||
− | + | == WormMethods chapters== | |
− | WormMethods chapters | ||
PWS: getting some reviews back | PWS: getting some reviews back | ||
− | + | == Models == | |
* PD: Deadline for proposals is next week | * PD: Deadline for proposals is next week | ||
− | PATO | + | === PATO === |
* RL: Do we need to extend the model to accommodate the ontology? Is there a name class? | * RL: Do we need to extend the model to accommodate the ontology? Is there a name class? | ||
* CG: Cost for creating a new class? | * CG: Cost for creating a new class? | ||
Line 36: | Line 35: | ||
* Discussion about whether or not we will show the data on the website | * Discussion about whether or not we will show the data on the website | ||
* CG: will create a new class for PATO | * CG: will create a new class for PATO | ||
− | * -- discussion about who handles obo->ace files: individual curators. | + | * -- discussion about who handles obo->ace files: individual curators. do, they aren't handled generically. |
− | |||
* DR: Hold off on changes for micropublication (?Expression_patt) | * DR: Hold off on changes for micropublication (?Expression_patt) | ||
------> DISCONNECTED <------ sorry | ------> DISCONNECTED <------ sorry | ||
+ | === Other model changes === | ||
+ | ** Molecule | ||
+ | ** Expression_cluster | ||
+ | ** Human_disease (Xiaodong) | ||
+ | ** GO_term (addition to ?Paper) | ||
− | + | * Raymond: should we go through a two tier process for models? | |
− | + | ** 1. Review process | |
− | + | ** 2. Put it into the models file | |
− | |||
− | Raymond: should we go through a two tier process for models? | ||
− | * 1. Review process | ||
− | * 2. Put it into the models file | ||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | -- | + | * PD: discussion typically occurs before the proposal hits the model list |
+ | * RL: Caltech is dispersed and the expertise is deluded. ky: although that is what I heard too; perhaps it's supposed to be "diluted"? -- ''Yes, it was a joke to see if anyone was paying attention'' | ||
+ | * WC: How do model changes work for Datomic? | ||
− | + | * *PD: Will come up with a working document.* | |
− | |||
+ | == Intermine == | ||
+ | * SG: Webapp is running and still a few small issues | ||
− | GBrowse/JBrowse | + | == GBrowse/JBrowse== |
− | * SC: | + | * SC: most modencode data ported, will be promoting jbrowse in 250. |
− | + | == cross MOD API grant == | |
− | * | + | * PWS: looks like will be funded |
Latest revision as of 01:51, 5 September 2015
Contents
Agenda
1
2
Minutes
Datomic Progress
- Paul and Gary: porting, perl scripts for querying datomic
- Juancarlos: finished working through documentation
- Adam:
- Method for provisioning machines with Datomic, website, etc.
- Using Docker to be able to quickly deploy going forward.
- Makes future development much easier, good error reporting
Genetomic / curation database
- TH: Is the genetomic instance in production?
- TD: Not yet in production but close; requires input from Mary Ann and others.
WormMethods chapters
PWS: getting some reviews back
Models
- PD: Deadline for proposals is next week
PATO
- RL: Do we need to extend the model to accommodate the ontology? Is there a name class?
- CG: Cost for creating a new class?
- TD: already bringing in .obo files from other ontologies
- Discussion about whether or not we will show the data on the website
- CG: will create a new class for PATO
- -- discussion about who handles obo->ace files: individual curators. do, they aren't handled generically.
- DR: Hold off on changes for micropublication (?Expression_patt)
> DISCONNECTED <------ sorry
Other model changes
- Molecule
- Expression_cluster
- Human_disease (Xiaodong)
- GO_term (addition to ?Paper)
- Raymond: should we go through a two tier process for models?
- 1. Review process
- 2. Put it into the models file
- PD: discussion typically occurs before the proposal hits the model list
- RL: Caltech is dispersed and the expertise is deluded. ky: although that is what I heard too; perhaps it's supposed to be "diluted"? -- Yes, it was a joke to see if anyone was paying attention
- WC: How do model changes work for Datomic?
- *PD: Will come up with a working document.*
Intermine
- SG: Webapp is running and still a few small issues
GBrowse/JBrowse
- SC: most modencode data ported, will be promoting jbrowse in 250.
cross MOD API grant
- PWS: looks like will be funded