Difference between revisions of "WebDev 2009.08.12-Agenda and Minutes"
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Line 7: | Line 7: | ||
Minutes reviewed | Minutes reviewed | ||
− | Update: | + | *Update: |
− | update to production nodes to WS204 smooth | + | **update to production nodes to WS204 smooth |
− | modification to address challenges with CentOS - using NFS, distributed logging | + | **modification to address challenges with CentOS - using NFS, distributed logging |
− | review CSHL current hardware with PV and planning maintenance -- most will be allowed to "die out" | + | **review CSHL current hardware with PV and planning maintenance -- most will be allowed to "die out" |
== Describe WS205 development status (Norie; 5 minutes) == | == Describe WS205 development status (Norie; 5 minutes) == | ||
Line 28: | Line 28: | ||
== modENCODE status update (Marc, Zheng; 10 minutes) == | == modENCODE status update (Marc, Zheng; 10 minutes) == | ||
− | Mark: 8-9 data track coming for Loeb data | + | *Mark: 8-9 data track coming for Loeb data |
− | Wiggle files for some data discussed (chip-chip?) | + | *Wiggle files for some data discussed (chip-chip?) |
− | Script created sometime ago to turn data to binary format (by LS?) | + | *Script created sometime ago to turn data to binary format (by LS?) |
− | Ant and TH working to strategy to move data to WormBase | + | *Ant and TH working to strategy to move data to WormBase |
− | For trial, Most mature dataset? -> from 2007 Nature paper, dosage compensation data | + | *For trial, Most mature dataset? -> from 2007 Nature paper, dosage compensation data |
− | TH: recommend trial with above data to solidify workflow... | + | *TH: recommend trial with above data to solidify workflow... |
− | Mark to email number details to TH | + | *Mark to email number details to TH |
== Define WormMart go-live date (Zheng and Todd; 10 minutes) == | == Define WormMart go-live date (Zheng and Todd; 10 minutes) == | ||
+ | |||
+ | *site - http://ls2.res.oicr.on.ca:9010 | ||
+ | ** not available outside firewall | ||
+ | ** currently has raw web interface; dramatically diff from WB's | ||
+ | ** Discussion with Will indicated need to change interface to mature format (WB's), 2/b done manually | ||
+ | ** ZZ updating interface currently to be more user friendly | ||
+ | ** discussion with biomart programmer ongoing | ||
+ | ** need 1-2 wks worth of work | ||
+ | ** needs list of columns to be included to expedite work | ||
== Open Table == | == Open Table == |
Latest revision as of 10:42, 12 August 2009
Contents
- 1 Agenda
- 2 Minutes from 2009.08.05
- 3 Administrative Update (Todd; 10 minutes)
- 4 Describe WS205 development status (Norie; 5 minutes)
- 5 Development checklist (Norie)
- 6 Define WS205 development goals (All; 10 munutes)
- 7 modENCODE status update (Marc, Zheng; 10 minutes)
- 8 Define WormMart go-live date (Zheng and Todd; 10 minutes)
- 9 Open Table
Agenda
Minutes from 2009.08.05
Administrative Update (Todd; 10 minutes)
Minutes reviewed
- Update:
- update to production nodes to WS204 smooth
- modification to address challenges with CentOS - using NFS, distributed logging
- review CSHL current hardware with PV and planning maintenance -- most will be allowed to "die out"
Describe WS205 development status (Norie; 5 minutes)
- Icognita
- Blast/BLAT built (working on interface)
- Building the GBrowse database for incognita
Development checklist (Norie)
http://www.wormbase.org/wiki/index.php/Release_Schedule#Post_Compile_Check_Matrix
TH: Maybe turn it into a template? Or at least its own page then copy and paste for each release.
Define WS205 development goals (All; 10 munutes)
modENCODE status update (Marc, Zheng; 10 minutes)
- Mark: 8-9 data track coming for Loeb data
- Wiggle files for some data discussed (chip-chip?)
- Script created sometime ago to turn data to binary format (by LS?)
- Ant and TH working to strategy to move data to WormBase
- For trial, Most mature dataset? -> from 2007 Nature paper, dosage compensation data
- TH: recommend trial with above data to solidify workflow...
- Mark to email number details to TH
Define WormMart go-live date (Zheng and Todd; 10 minutes)
- site - http://ls2.res.oicr.on.ca:9010
- not available outside firewall
- currently has raw web interface; dramatically diff from WB's
- Discussion with Will indicated need to change interface to mature format (WB's), 2/b done manually
- ZZ updating interface currently to be more user friendly
- discussion with biomart programmer ongoing
- need 1-2 wks worth of work
- needs list of columns to be included to expedite work