Difference between revisions of "WormBase Model:Position Matrix"
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== Model == | == Model == | ||
<pre> | <pre> | ||
+ | //Position_Matrix class | ||
+ | //General data model for known or inferred binding sites of transcription factors to DNA, accomodating either a straight position-frequency matrix (PFM), or a position-specific weight matrix | ||
+ | ?Position_Matrix Description ?Text #Evidence | ||
+ | Brief_id UNIQUE ?Text // Addition Xiaodong | ||
+ | Type UNIQUE Frequency | ||
+ | Weight | ||
+ | Background_model Text UNIQUE Float | ||
+ | Site_values Text UNIQUE Float REPEAT | ||
+ | Threshold Float | ||
+ | Associated_feature ?Feature XREF Associated_with_Position_Matrix #Evidence | ||
+ | Sites_used UNIQUE Int | ||
+ | Derived_from_matrix ?Position_Matrix | ||
+ | Bound_by_gene_product ?Gene XREF Product_binds_matrix #Evidence //Addition by Gary Williams | ||
+ | Transcription_factor Unique ?Transcription_factor XREF Position_matrix #Evidence //Addition by Gary Williams | ||
+ | Remark ?Text #Evidence | ||
</pre> | </pre> | ||
== Proposed Changes == | == Proposed Changes == | ||
+ | Background_model | ||
+ | |||
+ | Threshold | ||
+ | |||
+ | Associated_feature | ||
+ | |||
+ | Bound_by_gene_product |
Latest revision as of 15:01, 4 October 2012
Curator Comments/Description
Model
//Position_Matrix class //General data model for known or inferred binding sites of transcription factors to DNA, accomodating either a straight position-frequency matrix (PFM), or a position-specific weight matrix ?Position_Matrix Description ?Text #Evidence Brief_id UNIQUE ?Text // Addition Xiaodong Type UNIQUE Frequency Weight Background_model Text UNIQUE Float Site_values Text UNIQUE Float REPEAT Threshold Float Associated_feature ?Feature XREF Associated_with_Position_Matrix #Evidence Sites_used UNIQUE Int Derived_from_matrix ?Position_Matrix Bound_by_gene_product ?Gene XREF Product_binds_matrix #Evidence //Addition by Gary Williams Transcription_factor Unique ?Transcription_factor XREF Position_matrix #Evidence //Addition by Gary Williams Remark ?Text #Evidence
Proposed Changes
Background_model
Threshold
Associated_feature
Bound_by_gene_product