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• GFF3 features (C. briggsae)
  ...ntroduction information on the GFF3 files, please see [[GFF3_features GFF3 features] article. The WormBase ''C. briggsae'' GFF3 files can be downloaded from:
  3 KB (334 words) - 23:13, 13 August 2010
• GFF3 features (C. elegans)
  ...ntroduction information on the GFF3 files, please see [[GFF3_features|GFF3 features]] article. The WormBase ''C. elegans'' GFF3 files can be downloaded from:
  19 KB (1,985 words) - 23:13, 13 August 2010

Page text matches

• Converting GFF2 to GFF3
  ...f the Wormbase build. The data is provided in GFF2 format and converted to GFF3 at the CSHL side. ./wormbasegff2togff3.pl elegansWSXXX.gff2 | gzip -c > elegansWSXXX.gff3.gz
  2 KB (286 words) - 18:26, 11 August 2010
• GFF3 features (C. briggsae)
  ...ntroduction information on the GFF3 files, please see [[GFF3_features GFF3 features] article. The WormBase ''C. briggsae'' GFF3 files can be downloaded from:
  3 KB (334 words) - 23:13, 13 August 2010
• CSHL documentation
  * [[Converting GFF2 to GFF3]] - ''Converting Wormbase GFF data from GFF2 to GFF3'' ...[GFF3 features (C. elegans)]] - ''GFF3 features included in the C. elegans GFF3 file''
  2 KB (293 words) - 22:32, 24 December 2010
• WebDev 2009.07.22-Agenda and Minutes
  * GFF2 to GFF3 converter * Working on modularization, which features to export
  1 KB (176 words) - 10:55, 22 July 2009
• Issues-9/10/2013
  === GFF3 === * emailed KH - GFF3 of c_elegans
  2 KB (273 words) - 14:57, 10 September 2013
• WebDev 2013.09.13-Agenda and Minutes
  * GFF3 update * Test new GFF3 and define necessary fixes for Hinxton
  793 bytes (94 words) - 14:55, 13 September 2013
• Issues-9/24/2013
  Note: Most GBrowse fixes were reverted and pushed back to WS240 together with GFF3 support * Generated sources/datafiles for FASTA and GFF3 for all species
  3 KB (416 words) - 18:30, 24 September 2013
• WebDev 2009.09.23-Agenda and Minutes
  - Has 14 features to process - Some features unavailable like enzyme id
  2 KB (252 words) - 09:25, 28 September 2009
• WebDev 2013.09.06-Agenda and Minutes
  * GFF3 ** source/type changed for all species GFF2->GFF3
  2 KB (253 words) - 15:33, 6 September 2013
• WBConfCall 2013.10.17-Agenda and Minutes
  ** 2d7h to generate dna sequences from located features * sequences for proteins and genomic features for all species except C.sp 5 and C.sp.11
  2 KB (361 words) - 16:32, 17 October 2013
• WebDev 2013.08.30-Agenda and Minutes
  Choose species; downloads fast, gff3, GO, gene association files, classes for XML * Test new GFF3 and define necessary fixes for Hinxton
  2 KB (357 words) - 15:40, 30 August 2013
• Issues-7/23/2013
  * Test GFF3 and update species still using Bio::DB::GFF to Bio::DB::SeqFeature::Store * Feature request: Features connected to Transcripts [https://github.com/WormBase/website/issues/1567 1
  3 KB (412 words) - 18:10, 23 July 2013
• GFF3 features (C. elegans)
  ...ntroduction information on the GFF3 files, please see [[GFF3_features|GFF3 features]] article. The WormBase ''C. elegans'' GFF3 files can be downloaded from:
  19 KB (1,985 words) - 23:13, 13 August 2010
• Website:Genome Browser Survey
  * for downloading sequences of genomic features * track data as GFF3
  6 KB (889 words) - 14:42, 19 June 2014
• GFF3specProposal
  = Proposal to adapt the EnsEMBL cigar format to GFF3 = This is a proposal and in no way implemented or accepted for the official GFF3 spec. It exists solely here on WormBase to get community input.
  13 KB (1,951 words) - 23:14, 13 August 2010
• WS229
  ...S.WS229.annotations.gff[2|3].gz - Sequence features in either GFF2 or GFF3 format 7095 Features marking DNAse1 hypersensitive sites have been added to the database.
  17 KB (1,988 words) - 11:15, 21 December 2011
• WS289
  ...WS288.annotations.gff[2|3].gz - Sequence features in either GFF2 or GFF3 format ...CT.WS288.protein_annotation.gff3.gz - Sequence features in proteins in GFF3 format
  16 KB (1,733 words) - 21:55, 11 May 2023
• WS284
  ...WS284.annotations.gff[2|3].gz - Sequence features in either GFF2 or GFF3 format ...CT.WS284.protein_annotation.gff3.gz - Sequence features in proteins in GFF3 format
  17 KB (1,841 words) - 21:54, 11 May 2023
• WS231
  ...S.WS231.annotations.gff[2|3].gz - Sequence features in either GFF2 or GFF3 format No of new SL1 features: 504
  16 KB (1,820 words) - 14:15, 13 September 2012
• WS232
  ...S.WS232.annotations.gff[2|3].gz - Sequence features in either GFF2 or GFF3 format New Transcriptionally Active Region Features
  15 KB (1,729 words) - 14:15, 13 September 2012

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