Difference between revisions of "WormMine Anatomy term Ace mapping"

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(Created page with '<tt> {| border="1" ! InterMine field !! XPath to data |- |primaryIdentifier ||/Gene/text()[1] |- |secondaryIdentifier ||/Gene/Identity/Name/CGC_name/Gene_name/text()[1] |- |symbo…')
 
 
(One intermediate revision by the same user not shown)
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|-
 
|-
 
|primaryIdentifier
 
|primaryIdentifier
−
||/Gene/text()[1]
+
||/Anatomy_term/text()[1]
 
|-
 
|-
−
|secondaryIdentifier
+
|definition
−
||/Gene/Identity/Name/CGC_name/Gene_name/text()[1]
+
||/Anatomy_term/Definition[1]/text[1]
 
|-
 
|-
−
|symbol
+
|synonym
−
||/Gene/Identity/Name/CGC_name/Gene_name/text()[1]
+
||/Anatomy_term/Synonym[1]/Anatomy_name/text()[1]
 
|-
 
|-
−
|operon
+
|parents
−
||/Gene/Gene_info/Contained_in_operon/Operon
+
||/Anatomy_term/Parent[1]/*/Anatomy_term
 
|-
 
|-
−
|lastUpdated
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|children
−
||/Gene/Gene_info/Structured_description/Provisional_description/Text/Date_last_updated/Date
+
||/Anatomy_term/Child[1]/*/Anatomy_term
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|-
 
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|briefDescription
 
−
||/Gene/Gene_info/Structured_description/Concise_description/Text/text()[1]
 
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|-
 
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|description
 
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||/Gene/Gene_info/Structured_description/Provisional_description/Text/text()[1]
 
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|-
 
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|organism.name
 
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||/Gene/Identity/Species/Species
 
−
|-
 
−
|referenceAllele.primaryIdentifier
 
−
||/Gene/Gene_info/Reference_allele/Variation/text()[1]
 
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|-
 
−
|transcripts.primaryIdentifier
 
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||/Gene/Molecular_info/Corresponding_transcript/Transcript
 
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|-
 
−
|alleles.primaryIdentifier
 
−
||/Gene/Gene_info/Allele/Variation
 
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|-
 
−
|strains.primaryIdentifier
 
−
||/Gene/Gene_info/Strain/Strain
 
 
|}
 
|}
 
</tt>
 
</tt>

Latest revision as of 20:11, 2 May 2013

InterMine field XPath to data
primaryIdentifier /Anatomy_term/text()[1]
definition /Anatomy_term/Definition[1]/text[1]
synonym /Anatomy_term/Synonym[1]/Anatomy_name/text()[1]
parents /Anatomy_term/Parent[1]/*/Anatomy_term
children /Anatomy_term/Child[1]/*/Anatomy_term

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