WormBase SAB Meeting

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2011 Scientific Advisory Board Meeting

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SAB Meeting 2011

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California Institute of Technology, February 3-4, 2011

[edit] Wednesday 21st May – Pre-Meeting (WormBase staff only)

6:30 – 18:00 Put right the World [edit] Thursday 3rd May – Millikan Board Room


[edit] 9:00 - 12:00:

   * Introduction: Where we are; Hinxton Reorganization Paul Sternberg 
   * Build Process (+ models?) - Kevin Howe
   * Site usage; introduction to the new site (Todd; 30 minutes)
   * Tour of the new website (Abby; 30 minutes)     


Process and pathway curation and display


DISCUSSION TOPICS

   Sequence curation manual versus RNA-seq; how do we automate creation of new isoforms
   Handling EST-based and fragmented genomes
   GBrowse: making it -seq friendly
   Interaction browser:  what shall we use?


IBELOW IS stil mostly 2008 SCHEDULE

Website, UI, Build, Orthology

   * Introduction: Hinxton Reorganization Paul Sternberg 
   * New Website: Todd Harris (slides)
   * Genome Browser       (slides)
   * Build Process:  (slides)
   * Comparative Analysis:  (slides)
   * modENCODE & Chado migration (slides) 

[edit] 13:00 – 15:30 Sequence curation and analysis, other nematodes

   * Introduction: John Spieth (slides)
   * Curation Tool: Gary Williams (slides)
   * Current methods and metrics: Paul Davis (slides)
   * Briggsae curation and SNPS: Darin Blasiar (slides)
   * Future curation: Anthony Rogers (slides)

[edit] 15:30 - Literature Curation

   * Textpresso-based Curation: Kimberly Van Auken (slides)
   * Overview;Phenotype Curation: Gary Schindelman (slides)
   * Generalizing Phenote: Juancarlos Chan (slides)
   * Genetics: Mary Ann Tuli (slides)
   * Cell-centric curation: Raymond Lee (slides)
   * Gene Regulation: Xioadong Wang (slides) 

[edit] General Discussion

   * Coordination among sites
   * Quality control
   * Outreach
   * Database migration community annotation 

[edit] Friday 23rd May

8:30 – 9:00 Advisors breakfast

9:30 – 12:00 Advisors summary report

12:00 – 13:00 Lunch

13:00 – Discussion

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