Difference between revisions of "WormBase SAB Meeting"

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* Literature curation introducton : Gary Schindelman (update on stats) - 5 minutes
 
* Literature curation introducton : Gary Schindelman (update on stats) - 5 minutes
  
* Ontology Annotator : Juancarlos Chan
+
* Ontology Annotator  
 +
** Juancarlos Chan - general introduction of OA
 +
**Xiaodong Wang - developing interaction OA
  
 
* Picture curation : Daniela Raciti - 10 minutes
 
* Picture curation : Daniela Raciti - 10 minutes

Revision as of 16:54, 21 January 2011

WormBase Scientific Advisory Board Meeting

Caltechlogo.gif
California Institute of Technology, February 3rd - 4th 2011

Wednesday 2nd Feb – Pre-Meeting (WormBase central)

(AB not required to attend this session)

6:30 – 18:00

Put right the World

DISCUSSION TOPICS

   Sequence curation manual versus RNA-seq; how do we automate creation of new isoforms
   Handling EST-based and fragmented genomes
   GBrowse: making it -seq friendly
   Interaction browser:  what shall we use?
   Resequencing a standard N2 isolate
   Chip-seq and other large datasets - where should the be stored to maximise usage but cut overhead?
   Minimum requirements for a genome to be allowed into WormBase - submission to EMBL/GenBank, gene prediction?
   Which genomes should be manually curated?

Thursday 3rd Feb – Millikan Board Room

9:00 - 12:00: Overview, Website, UI, Build, Orthology

  • Introduction: Where we are; Hinxton Reorganization - (Paul Sternberg; 15 min)
  • Slot for new Hinxton PIs (Paul Kersey and Matt Berriman; 30 mins)
  • Build, database and related things - (Kevin Howe; 30 mins)
  • User interface
    • Site usage; introduction to the new site (Todd; 30 minutes)
    • Tour of the new website (Abby; 30 minutes)
  • Process and pathway curation and display

13:00 – 15:30 Sequence curation and analysis, other nematodes

  • C. elegans(+ Tier II) Manual curation and projects? - Paul D. (20 mins)
  • Large scale datasets (curation/modENCODE) - Gary W. (30 mins)
  • Tier II genome (re)submissions -
  • Other genome analysis -


15:30 - Literature Curation

  • Literature curation introducton : Gary Schindelman (update on stats) - 5 minutes
  • Ontology Annotator
    • Juancarlos Chan - general introduction of OA
    • Xiaodong Wang - developing interaction OA
  • Picture curation : Daniela Raciti - 10 minutes

Possible topics:

  • Gene Function Curation - concise descriptions (update on numbers, curation approach)
  • Collaboration with other Databases/Projects - automation (ARRA), BioGRID, GO
    • GSA Arun/Karen

General Discussion

  • Coordination among sites
  • Quality control
  • Outreach
  • Database migration community annotation

Friday 4th Feb – Millikan Board Room

8:30 – 9:00 Advisors breakfast

9:30 – 12:00 Advisors summary report

12:00 – 13:00 Lunch

13:00 – Discussion

(AB not required to attend this session)

Arrivals/Departures

Arrive

  • Hinxton Crew - Pasadena Tuesday afternoon/evening?


Depart

  • Hinxton Crew minus Michael - Pasadena Sunday before lunch?
  • Michael P. - Pasadena Friday PM?