Difference between revisions of "WormBase SAB Meeting"

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13:00 – Discussion
 
13:00 – Discussion
  
<b>((AB not required to attend this session)</b>
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<b>(AB not required to attend this session)</b>
  
 
== Arrivals/Departures ==
 
== Arrivals/Departures ==

Revision as of 09:58, 19 January 2011

WormBase Scientific Advisory Board Meeting

Caltechlogo.gif
California Institute of Technology, February 3rd - 4th 2011

Wednesday 2nd Feb – Pre-Meeting (WormBase central)

(AB not required to attend this session)

6:30 – 18:00

Put right the World

DISCUSSION TOPICS

   Sequence curation manual versus RNA-seq; how do we automate creation of new isoforms
   Handling EST-based and fragmented genomes
   GBrowse: making it -seq friendly
   Interaction browser:  what shall we use?
   Resequencing a standard N2 isolate
   Chip-seq and other large GW datasets - where should the be stored to maximise usage but cut overhead?
   

Thursday 3rd Feb – Millikan Board Room

9:00 - 12:00: Overview, Website, UI, Build, Orthology

  • Introduction: Where we are; Hinxton Reorganization - (Paul Sternberg; 15 min)
  • Slot for new Hinxton PIs (Paul Kersey and Matt Berriman; 30 mins)
  • Build, database and related things - (Kevin Howe; 30 mins)
  • User interface
    • Site usage; introduction to the new site (Todd; 30 minutes)
    • Tour of the new website (Abby; 30 minutes)
  • Process and pathway curation and display

13:00 – 15:30 Sequence curation and analysis, other nematodes

  • C. elegans(+ Tier II) Manual curation and projects? - Paul D. (20 mins)
  • Large scale datasets (curation/modENCODE) - Gary W. (30 mins)
  • Tier II genome (re)submissions -
  • Other genome analysis -


15:30 - Literature Curation

  • Ontology Annotator : Juancarlos Chan

Possible topics:

  • Gene Function Curation - concise descriptions (update on numbers, curation approach)
  • Collaboration with other Databases/Projects - automation (ARRA), BioGRID, GO

General Discussion

  • Coordination among sites
  • Quality control
  • Outreach
  • Database migration community annotation

Friday 4th Feb – Millikan Board Room

8:30 – 9:00 Advisors breakfast

9:30 – 12:00 Advisors summary report

12:00 – 13:00 Lunch

13:00 – Discussion

(AB not required to attend this session)

Arrivals/Departures

Arrive

  • Hinxton Crew - Pasadena Tuesday afternoon/evening?


Depart

  • Hinxton Crew minus Michael - Pasadena Sunday before lunch?
  • Michael P. - Pasadena Friday PM?