Difference between revisions of "WormBase SAB Meeting"
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==Wednesday 2nd Feb – Pre-Meeting== | ==Wednesday 2nd Feb – Pre-Meeting== | ||
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6:30 – 18:00</b> | 6:30 – 18:00</b> | ||
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Interaction browser: what shall we use? | Interaction browser: what shall we use? | ||
Resequencing a standard N2 isolate | Resequencing a standard N2 isolate | ||
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==Thursday 3rd Feb – Millikan Board Room== | ==Thursday 3rd Feb – Millikan Board Room== | ||
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===9:00 - 12:00:Website, UI, Build, Orthology=== | ===9:00 - 12:00:Website, UI, Build, Orthology=== | ||
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* Database migration community annotation | * Database migration community annotation | ||
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==Friday 4th Feb – Millikan Board Room== | ==Friday 4th Feb – Millikan Board Room== | ||
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8:30 – 9:00 Advisors breakfast | 8:30 – 9:00 Advisors breakfast | ||
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13:00 – Discussion | 13:00 – Discussion | ||
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== Arrivals/Departures == | == Arrivals/Departures == | ||
Revision as of 17:28, 18 January 2011
WormBase Scientific Advisory Board Meeting
Contents
Wednesday 2nd Feb – Pre-Meeting
(AB not required to attend this session)
6:30 – 18:00
Put right the World
DISCUSSION TOPICS
Sequence curation manual versus RNA-seq; how do we automate creation of new isoforms Handling EST-based and fragmented genomes GBrowse: making it -seq friendly Interaction browser: what shall we use? Resequencing a standard N2 isolate
Thursday 3rd Feb – Millikan Board Room
9:00 - 12:00:Website, UI, Build, Orthology
- Introduction: Where we are; Hinxton Reorganization - Paul Sternberg (15 min)
- Build process - Kevin Howe
- New Website:
- Tour of the new website (Abby; 30 minutes)
- Genome Browser:
- Site usage; introduction to the new site (Todd; 30 minutes)
- Process and pathway curation and display
13:00 – 15:30 Sequence curation and analysis, other nematodes
- C. elegans(+ Tier II) Manual curation and projects? - Paul D. (20 mins)
- Large scale datasets (curation/modENCODE) - Gary W. (30 mins)
- Tier II genome (re)submissions -
- Other genome analysis -
15:30 - Literature Curation
- Ontology Annotator : Juancarlos Chan
Possible topics:
- Gene Function Curation - concise descriptions (update on numbers, curation approach)
- Collaboration with other Databases/Projects - automation (ARRA), BioGRID, GO
General Discussion
- Coordination among sites
- Quality control
- Outreach
- Database migration community annotation
Friday 4th Feb – Millikan Board Room
8:30 – 9:00 Advisors breakfast
9:30 – 12:00 Advisors summary report
12:00 – 13:00 Lunch
13:00 – Discussion
((AB not required to attend this session)
Arrivals/Departures
Arrive
- Hinxton Crew - Pasadena Tuesday afternoon/evening?
Depart
- Hinxton Crew minus Michael - Pasadena Sunday before lunch?
- Michael P. - Pasadena Friday PM?
