Difference between revisions of "WormBase SAB Meeting"
From WormBaseWiki
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* Introduction: Hinxton Reorganization Paul Sternberg | * Introduction: Hinxton Reorganization Paul Sternberg | ||
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| − | <b>13:00 – 15:30 Sequence curation and analysis, other nematodes</b> | + | <b> |
| + | ===13:00 – 15:30 Sequence curation and analysis, other nematodes=== | ||
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* C. elegans(+ Tier II) Manual curation and projects? - Paul D. (20 mins) | * C. elegans(+ Tier II) Manual curation and projects? - Paul D. (20 mins) | ||
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* Ontology Annotator : Juancarlos Chan | * Ontology Annotator : Juancarlos Chan | ||
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* Collaboration with other Databases/Projects - automation (ARRA), BioGRID, GO | * Collaboration with other Databases/Projects - automation (ARRA), BioGRID, GO | ||
| − | <b>General Discussion</b> | + | <b> |
| + | ===General Discussion=== | ||
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* Coordination among sites | * Coordination among sites | ||
Revision as of 17:17, 18 January 2011
WormBase Scientific Advisory Board Meeting
Contents
Wednesday 2nd Feb – Pre-Meeting
(WormBase staff only)
6:30 – 18:00
Put right the World
Thursday 3rd Feb – Millikan Board Room
9:00 - 12:00:
- Introduction: Where we are; Hinxton Reorganization - Paul Sternberg (15 min)
- Build Process (+ models?) - Kevin Howe
- Site usage; introduction to the new site (Todd; 30 minutes)
- Tour of the new website (Abby; 30 minutes)
- Process and pathway curation and display
DISCUSSION TOPICS
Sequence curation manual versus RNA-seq; how do we automate creation of new isoforms Handling EST-based and fragmented genomes GBrowse: making it -seq friendly Interaction browser: what shall we use? Resequencing a standard N2 isolate
Morning: Website, UI, Build, Orthology
- Introduction: Hinxton Reorganization Paul Sternberg
- New Website:
- Genome Browser:
- Build Process: Kev
- Comparative Analysis:
- modENCODE & Chado migration (??? is this left over from the 2008 schedule ???) - yes
13:00 – 15:30 Sequence curation and analysis, other nematodes
- C. elegans(+ Tier II) Manual curation and projects? - Paul D. (20 mins)
- Large scale datasets (curation/modENCODE) - Gary W. (30 mins)
- Tier II genome (re)submissions -
- Other genome analysis -
15:30 - Literature Curation
- Ontology Annotator : Juancarlos Chan
Possible topics:
- Gene Function Curation - concise descriptions (update on numbers, curation approach)
- Collaboration with other Databases/Projects - automation (ARRA), BioGRID, GO
General Discussion
- Coordination among sites
- Quality control
- Outreach
- Database migration community annotation
Friday 4th Feb – Millikan Board Room
8:30 – 9:00 Advisors breakfast
9:30 – 12:00 Advisors summary report
12:00 – 13:00 Lunch
13:00 – Discussion
Arrivals/Departures
Arrive
- Hinxton Crew - Pasadena Tuesday afternoon/evening?
Depart
- Hinxton Crew minus Michael - Pasadena Sunday before lunch?
- Michael P. - Pasadena Friday PM?
