Difference between revisions of "WormBase SAB Meeting"

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13:00 – Discussion
 
13:00 – Discussion
 +
  
 
== Arrivals/Departures ==
 
== Arrivals/Departures ==
 +
 +
<b>Arrive</b>
 +
 +
* Sanger Crew - Pasadena Monday late afternoon/evening?
 +
 +
 +
<b>Depart</b>
 +
 +
* Sanger Crew minus Michael - Pasadena Sunday before lunch?
 +
* Michael P. - Pasadena Friday PM?

Revision as of 12:17, 10 January 2011

2011 Scientific Advisory Board Meeting

SAB Meeting 2011

SAB 2011

California Institute of Technology, February 3rd - 4th


Wednesday 2nd Feb – Pre-Meeting

(WormBase staff only)

6:30 – 18:00

Put right the World


Thursday 3rd Feb – Millikan Board Room

9:00 - 12:00:

  • Introduction: Where we are; Hinxton Reorganization Paul Sternberg
  • Build Process (+ models?) - Kevin Howe
  • Site usage; introduction to the new site (Todd; 30 minutes)
  • Tour of the new website (Abby; 30 minutes)
  • Process and pathway curation and display


DISCUSSION TOPICS

   Sequence curation manual versus RNA-seq; how do we automate creation of new isoforms
   Handling EST-based and fragmented genomes
   GBrowse: making it -seq friendly
   Interaction browser:  what shall we use?


BELOW IS still mostly 2008 SCHEDULE


Morning: Website, UI, Build, Orthology

  • Introduction: Hinxton Reorganization Paul Sternberg
  • New Website:
  • Genome Browser:
  • Build Process:
  • Comparative Analysis:
  • modENCODE & Chado migration


13:00 – 15:30 Sequence curation and analysis, other nematodes

  • Introduction: John Spieth
  • Curation Tool: Gary Williams
  • Current methods and metrics:
  • Briggsae curation and SNPS:
  • Future curation:


15:30 - Literature Curation

  • Textpresso-based Curation: Kimberly Van Auken
  • Overview;Phenotype Curation: Gary Schindelman
  • Generalizing Phenote: Juancarlos Chan
  • Genetics: Mary Ann Tuli
  • Cell-centric curation: Raymond Lee
  • Gene Regulation: Xioadong Wang


General Discussion

  • Coordination among sites
  • Quality control
  • Outreach
  • Database migration community annotation


Friday 4th Feb

8:30 – 9:00 Advisors breakfast

9:30 – 12:00 Advisors summary report

12:00 – 13:00 Lunch

13:00 – Discussion


Arrivals/Departures

Arrive

  • Sanger Crew - Pasadena Monday late afternoon/evening?


Depart

  • Sanger Crew minus Michael - Pasadena Sunday before lunch?
  • Michael P. - Pasadena Friday PM?