Difference between revisions of "WormBase SAB Meeting"

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== SAB Meeting 2011 ==
 
== SAB Meeting 2011 ==
  
== California Institute of Technology, February 3-4, 2011 ==
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__TOC__
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<center><b>
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<font size="5" color="Blue">SAB 2011
  
'''Wednesday 21st May – Pre-Meeting'''
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California Institute of Technology, February 3rd - 4th
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</font>
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</b></center>
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==Wednesday 2nd Feb – Pre-Meeting==
  
 
<b>(WormBase staff only)</b>
 
<b>(WormBase staff only)</b>
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6:30 – 18:00 Put right the World
 
6:30 – 18:00 Put right the World
  
'''Thursday 3rd May – Millikan Board Room'''
 
  
9:00 - 12:00:  
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==Thursday 3rd Feb – Millikan Board Room==
    * Introduction: Where we are; Hinxton Reorganization Paul Sternberg  
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    * Build Process (+ models?) - Kevin Howe
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<b>9:00 - 12:00:</b>
    * Site usage; introduction to the new site (Todd; 30 minutes)
+
 
    * Tour of the new website (Abby; 30 minutes)     
+
* Introduction: Where we are; Hinxton Reorganization Paul Sternberg  
 +
 
 +
* Build Process (+ models?) - Kevin Howe
 +
 
 +
* Site usage; introduction to the new site (Todd; 30 minutes)
 +
 
 +
* Tour of the new website (Abby; 30 minutes)     
  
  
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BELOW IS still mostly 2008 SCHEDULE
 
BELOW IS still mostly 2008 SCHEDULE
  
Morning: Website, UI, Build, Orthology
 
  
    * Introduction: Hinxton Reorganization Paul Sternberg
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<b>Morning: Website, UI, Build, Orthology</b>
    * New Website: Todd Harris (slides)
+
 
    * Genome Browser       (slides)
+
* Introduction: Hinxton Reorganization Paul Sternberg
    * Build Process: (slides)
+
 
    * Comparative Analysis: (slides)
+
* New Website:
    * modENCODE & Chado migration (slides)
+
 
 +
* Genome Browser:
 +
 
 +
* Build Process:
 +
 
 +
* Comparative Analysis:
 +
 
 +
* modENCODE & Chado migration
 +
 
 +
 
 +
<b>13:00 – 15:30 Sequence curation and analysis, other nematodes</b>
 +
 
 +
* Introduction: John Spieth
 +
 
 +
* Curation Tool: Gary Williams
 +
 
 +
* Current methods and metrics:
 +
 
 +
* Briggsae curation and SNPS:
 +
 
 +
* Future curation:
 +
 
 +
 
 +
<b>15:30 - Literature Curation</b>
 +
 
 +
* Textpresso-based Curation: Kimberly Van Auken
 +
 
 +
* Overview;Phenotype Curation: Gary Schindelman
 +
 
 +
* Generalizing Phenote: Juancarlos Chan
 +
 
 +
* Genetics: Mary Ann Tuli
 +
 
 +
* Cell-centric curation: Raymond Lee
 +
 
 +
* Gene Regulation: Xioadong Wang
  
13:00 – 15:30 Sequence curation and analysis, other nematodes
 
  
    * Introduction: John Spieth (slides)
+
<b>General Discussion</b>
    * Curation Tool: Gary Williams (slides)
 
    * Current methods and metrics: (slides)
 
    * Briggsae curation and SNPS: (slides)
 
    * Future curation:
 
  
15:30 - Literature Curation
+
* Coordination among sites
  
    * Textpresso-based Curation: Kimberly Van Auken (slides)
+
* Quality control
    * Overview;Phenotype Curation: Gary Schindelman (slides)
 
    * Generalizing Phenote: Juancarlos Chan (slides)
 
    * Genetics: Mary Ann Tuli (slides)
 
    * Cell-centric curation: Raymond Lee (slides)
 
    * Gene Regulation: Xioadong Wang (slides)
 
  
General Discussion
+
* Outreach
  
    * Coordination among sites
+
* Database migration community annotation  
    * Quality control
 
    * Outreach
 
    * Database migration community annotation  
 
  
'''Friday 23rd May'''
+
==Friday 4th Feb==
  
 
8:30 – 9:00 Advisors breakfast
 
8:30 – 9:00 Advisors breakfast

Revision as of 12:09, 10 January 2011

2011 Scientific Advisory Board Meeting

SAB Meeting 2011

SAB 2011

California Institute of Technology, February 3rd - 4th

Wednesday 2nd Feb – Pre-Meeting

(WormBase staff only)

6:30 – 18:00 Put right the World


Thursday 3rd Feb – Millikan Board Room

9:00 - 12:00:

  • Introduction: Where we are; Hinxton Reorganization Paul Sternberg
  • Build Process (+ models?) - Kevin Howe
  • Site usage; introduction to the new site (Todd; 30 minutes)
  • Tour of the new website (Abby; 30 minutes)


Process and pathway curation and display


DISCUSSION TOPICS

   Sequence curation manual versus RNA-seq; how do we automate creation of new isoforms
   Handling EST-based and fragmented genomes
   GBrowse: making it -seq friendly
   Interaction browser:  what shall we use?


BELOW IS still mostly 2008 SCHEDULE


Morning: Website, UI, Build, Orthology

  • Introduction: Hinxton Reorganization Paul Sternberg
  • New Website:
  • Genome Browser:
  • Build Process:
  • Comparative Analysis:
  • modENCODE & Chado migration


13:00 – 15:30 Sequence curation and analysis, other nematodes

  • Introduction: John Spieth
  • Curation Tool: Gary Williams
  • Current methods and metrics:
  • Briggsae curation and SNPS:
  • Future curation:


15:30 - Literature Curation

  • Textpresso-based Curation: Kimberly Van Auken
  • Overview;Phenotype Curation: Gary Schindelman
  • Generalizing Phenote: Juancarlos Chan
  • Genetics: Mary Ann Tuli
  • Cell-centric curation: Raymond Lee
  • Gene Regulation: Xioadong Wang


General Discussion

  • Coordination among sites
  • Quality control
  • Outreach
  • Database migration community annotation

Friday 4th Feb

8:30 – 9:00 Advisors breakfast

9:30 – 12:00 Advisors summary report

12:00 – 13:00 Lunch

13:00 – Discussion

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