Difference between revisions of "WormBase SAB Meeting"
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== SAB Meeting 2011 == | == SAB Meeting 2011 == | ||
− | == | + | == California Institute of Technology, February 3-4, 2011 == |
+ | '''Wednesday 21st May – Pre-Meeting''' | ||
− | + | <b>(WormBase staff only)</b> | |
− | |||
− | |||
− | |||
6:30 – 18:00 Put right the World | 6:30 – 18:00 Put right the World | ||
− | |||
+ | '''Thursday 3rd May – Millikan Board Room''' | ||
9:00 - 12:00: | 9:00 - 12:00: | ||
Line 32: | Line 30: | ||
− | + | BELOW IS still mostly 2008 SCHEDULE | |
− | Website, UI, Build, Orthology | + | Morning: Website, UI, Build, Orthology |
− | * Introduction: Hinxton Reorganization Paul Sternberg | + | * Introduction: Hinxton Reorganization Paul Sternberg |
* New Website: Todd Harris (slides) | * New Website: Todd Harris (slides) | ||
* Genome Browser (slides) | * Genome Browser (slides) | ||
Line 47: | Line 45: | ||
* Introduction: John Spieth (slides) | * Introduction: John Spieth (slides) | ||
* Curation Tool: Gary Williams (slides) | * Curation Tool: Gary Williams (slides) | ||
− | * Current methods and metrics: | + | * Current methods and metrics: (slides) |
− | * Briggsae curation and SNPS: | + | * Briggsae curation and SNPS: (slides) |
− | * Future curation: | + | * Future curation: |
15:30 - Literature Curation | 15:30 - Literature Curation | ||
Line 67: | Line 65: | ||
* Database migration community annotation | * Database migration community annotation | ||
− | Friday 23rd May | + | '''Friday 23rd May''' |
8:30 – 9:00 Advisors breakfast | 8:30 – 9:00 Advisors breakfast |
Revision as of 11:58, 10 January 2011
2011 Scientific Advisory Board Meeting
SAB Meeting 2011
California Institute of Technology, February 3-4, 2011
Wednesday 21st May – Pre-Meeting
(WormBase staff only)
6:30 – 18:00 Put right the World
Thursday 3rd May – Millikan Board Room
9:00 - 12:00:
* Introduction: Where we are; Hinxton Reorganization Paul Sternberg * Build Process (+ models?) - Kevin Howe * Site usage; introduction to the new site (Todd; 30 minutes) * Tour of the new website (Abby; 30 minutes)
Process and pathway curation and display
DISCUSSION TOPICS
Sequence curation manual versus RNA-seq; how do we automate creation of new isoforms Handling EST-based and fragmented genomes GBrowse: making it -seq friendly Interaction browser: what shall we use?
BELOW IS still mostly 2008 SCHEDULE
Morning: Website, UI, Build, Orthology
* Introduction: Hinxton Reorganization Paul Sternberg * New Website: Todd Harris (slides) * Genome Browser (slides) * Build Process: (slides) * Comparative Analysis: (slides) * modENCODE & Chado migration (slides)
13:00 – 15:30 Sequence curation and analysis, other nematodes
* Introduction: John Spieth (slides) * Curation Tool: Gary Williams (slides) * Current methods and metrics: (slides) * Briggsae curation and SNPS: (slides) * Future curation:
15:30 - Literature Curation
* Textpresso-based Curation: Kimberly Van Auken (slides) * Overview;Phenotype Curation: Gary Schindelman (slides) * Generalizing Phenote: Juancarlos Chan (slides) * Genetics: Mary Ann Tuli (slides) * Cell-centric curation: Raymond Lee (slides) * Gene Regulation: Xioadong Wang (slides)
General Discussion
* Coordination among sites * Quality control * Outreach * Database migration community annotation
Friday 23rd May
8:30 – 9:00 Advisors breakfast
9:30 – 12:00 Advisors summary report
12:00 – 13:00 Lunch
13:00 – Discussion