Difference between revisions of "WormBase SAB Meeting"

From WormBaseWiki
Jump to navigationJump to search
 
(179 intermediate revisions by 12 users not shown)
Line 1: Line 1:
<center><b>
 
<font size="5" color="Blue">WormBase Scientific Advisory Board Meeting
 
  
[[File:Caltechlogo.gif|frame|none]]California Institute of Technology, February 3rd - 4th 2011
+
= Meeting list =
</font>
+
[[2018_Advisory_Board_Meeting | 2018 SAB Meeting]]
</b></center>
 
__TOC__
 
<b>
 
==Wednesday 2nd Feb – Pre-Meeting (WormBase central)==
 
  
(AB not required to attend this session)
+
[[2016_Advisory_Board_Meeting | 2016 SAB Meeting]]
  
6:30 – 18:00</b>
+
[[2014_Advisory_Board_Meeting | 2014 SAB Meeting]]
  
Put right the World
+
[[2013_Advisory_Board_Meeting | 2013 SAB Meeting]]
  
DISCUSSION TOPICS
+
[[2011_Advisory_Board_Meeting | 2011 SAB Meeting]]
    Sequence curation manual versus RNA-seq; how do we automate creation of new isoforms
 
    Handling EST-based and fragmented genomes
 
    GBrowse: making it -seq friendly
 
    Interaction browser:  what shall we use?
 
    Resequencing a standard N2 isolate
 
    Chip-seq and other large datasets - where should the be stored to maximise usage but cut overhead?
 
    Minimum requirements for a genome to be allowed into WormBase - submission to EMBL/GenBank, gene prediction?
 
    Which genomes should be manually curated?
 
<b>
 
 
 
==Thursday 3rd Feb – Millikan Board Room==
 
 
 
=== 9:00 - 12:00: Overview, Website, UI, Build, Orthology ===
 
</b>
 
 
 
* Introduction: Where we are; Hinxton Reorganization - (Paul Sternberg; 15 min)
 
 
 
* Slot for new Hinxton PIs (Paul Kersey and Matt Berriman; 30 mins)
 
 
 
* Build, database and related things - (Kevin Howe; 30 mins)
 
 
 
* User interface
 
** Site usage; introduction to the new site (Todd; 30 minutes)
 
** Tour of the new website (Abby; 30 minutes)   
 
 
 
* Process and pathway curation and display
 
 
 
* Data Integration - WormMart (Ruihua; 10 minutes)
 
 
 
<b>
 
 
 
===13:00 – 15:30 Sequence curation and analysis, other nematodes===
 
</b>
 
 
 
* C. elegans(+ Tier II) Manual curation and projects? - Paul D. (20 mins)
 
 
 
* Large scale datasets (curation/modENCODE) - Gary W. (30 mins)
 
** microarray and SPELL -Wen C. (5 min)
 
 
 
* Tier II genome (re)submissions -
 
 
 
* Other genome analysis -
 
 
 
 
 
<b>
 
 
 
===15:30 - Literature Curation===
 
</b>
 
 
 
* Literature curation introducton : Gary Schindelman (update on stats) - 5 minutes
 
 
 
* Ontology Annotator
 
** Juancarlos Chan - general introduction of OA
 
**Xiaodong Wang - developing interaction OA
 
 
 
* Picture curation : Daniela Raciti - 10 minutes
 
* Virtual Worm Overview : Chris Grove - 2 minutes
 
 
 
Possible topics:
 
 
 
* Gene Function Curation - concise descriptions (update on numbers, curation approach)
 
 
 
* Collaboration with other Databases/Projects - automation (ARRA), BioGRID, GO
 
**GSA Arun/Karen
 
 
 
<b>
 
 
 
===General Discussion===
 
</b>
 
 
 
* Coordination among sites
 
 
 
* Quality control
 
 
 
* Outreach
 
 
 
* Database migration community annotation
 
<b>
 
 
 
==Friday 4th Feb – Millikan Board Room==
 
</b>
 
8:30 – 9:00 Advisors breakfast
 
 
 
9:30 – 12:00 Advisors summary report
 
 
 
12:00 – 13:00 Lunch
 
 
 
13:00 – Discussion
 
 
 
<b>(AB not required to attend this session)</b>
 
 
 
== Arrivals/Departures ==
 
 
 
<b>Arrive</b>
 
 
 
* Hinxton Crew - Pasadena Tuesday afternoon/evening?
 
 
 
 
 
<b>Depart</b>
 
 
 
* Hinxton Crew minus Michael - Pasadena Sunday before lunch?
 
* Michael P. - Pasadena Friday PM?
 

Latest revision as of 12:39, 7 June 2018