Difference between revisions of "WormBase SAB Meeting"

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<font size="5" color="Blue">WormBase Scientific Advisory Board Meeting
 
  
[[File:Caltechlogo.gif|frame|none]]California Institute of Technology, February 3rd - 4th 2011
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= Meeting list =
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[[2018_Advisory_Board_Meeting | 2018 SAB Meeting]]
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__TOC__
 
  
==Wednesday 2nd Feb – Pre-Meeting==
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[[2016_Advisory_Board_Meeting | 2016 SAB Meeting]]
  
<b>(WormBase staff only)
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[[2014_Advisory_Board_Meeting | 2014 SAB Meeting]]
  
6:30 – 18:00</b>
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[[2013_Advisory_Board_Meeting | 2013 SAB Meeting]]
  
Put right the World
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[[2011_Advisory_Board_Meeting | 2011 SAB Meeting]]
 
 
 
 
==Thursday 3rd Feb – Millikan Board Room==
 
 
 
<b>9:00 - 12:00:</b>
 
 
 
* Introduction: Where we are; Hinxton Reorganization - Paul Sternberg (15 min)
 
 
 
* Build Process (+ models?) - Kevin Howe
 
 
 
* Site usage; introduction to the new site (Todd; 30 minutes)
 
 
 
* Tour of the new website (Abby; 30 minutes)   
 
 
 
* Process and pathway curation and display
 
 
 
 
 
 
 
DISCUSSION TOPICS
 
    Sequence curation manual versus RNA-seq; how do we automate creation of new isoforms
 
    Handling EST-based and fragmented genomes
 
    GBrowse: making it -seq friendly
 
    Interaction browser:  what shall we use?
 
 
 
 
 
BELOW IS still mostly 2008 SCHEDULE
 
 
 
 
 
<b>Morning: Website, UI, Build, Orthology</b>
 
 
 
* Introduction: Hinxton Reorganization Paul Sternberg
 
 
 
* New Website:
 
 
 
* Genome Browser:
 
 
 
* Build Process:
 
 
 
* Comparative Analysis:
 
 
 
* modENCODE & Chado migration
 
 
 
 
 
<b>13:00 – 15:30 Sequence curation and analysis, other nematodes</b>
 
 
 
Topics:
 
 
 
C. elegans Manual curation and projects? - Paul D. (15 mins)
 
 
 
Large scale datasets (curation/modENCODE) - Gary W. (30 mins)
 
 
 
 
 
 
 
 
 
<b>15:30 - Literature Curation</b>
 
 
 
* Ontology Annotator : Juancarlos Chan
 
 
 
Possible topics:
 
 
 
* Gene Function Curation - concise descriptions (update on numbers, curation approach)
 
 
 
* Collaboration with other Databases/Projects - automation (ARRA), BioGRID, GO
 
 
 
<b>General Discussion</b>
 
 
 
* Coordination among sites
 
 
 
* Quality control
 
 
 
* Outreach
 
 
 
* Database migration community annotation
 
 
 
==Friday 4th Feb – Millikan Board Room==
 
 
 
8:30 – 9:00 Advisors breakfast
 
 
 
9:30 – 12:00 Advisors summary report
 
 
 
12:00 – 13:00 Lunch
 
 
 
13:00 – Discussion
 
 
 
 
 
== Arrivals/Departures ==
 
 
 
<b>Arrive</b>
 
 
 
* Sanger Crew - Pasadena Tuesday afternoon/evening?
 
 
 
 
 
<b>Depart</b>
 
 
 
* Sanger Crew minus Michael - Pasadena Sunday before lunch?
 
* Michael P. - Pasadena Friday PM?
 

Latest revision as of 12:39, 7 June 2018