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− | <center><b>
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− | <font size="5" color="Blue">[[WormBase_Consortium]] Scientific Advisory Board Meeting
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− | [[File:Caltechlogo.gif|frame|none]]California Institute of Technology, January 27-29, 2013 | + | = Meeting list = |
− | </font>
| + | [[2018_Advisory_Board_Meeting | 2018 SAB Meeting]] |
− | </b></center>
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− | __TOC__
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− | ===[[WormBase_Consortium#Scientific_Advisory_Board |Advisors list]]===
| + | [[2016_Advisory_Board_Meeting | 2016 SAB Meeting]] |
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− | == Questions to address the Advisory Board ==
| + | [[2014_Advisory_Board_Meeting | 2014 SAB Meeting]] |
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− | * How can we best handle the multiple nematode genomes, display the data and provide analytical tools to our users?
| + | [[2013_Advisory_Board_Meeting | 2013 SAB Meeting]] |
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− | * How can we handle natural variation in C. elegans and other species?
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− | * How can we display and analyze transcriptional regulatory networks?
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− | * How can we best capture and display biological pathways?
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− | * How can we best capture community annotation or help from the community?
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− | * How do we make WormBase accessible and useful to human geneticists?
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− | * How should we prioritize RNAi versus other gene function curation?
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− | * How important are daily/weekly updates? How best to implement?
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− | * How should we make use of microarray/RNA-seq data?
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− | ==Sunday 27th Jan – Pre-Meeting (WormBase central)==
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− | '''(Advisory Board not required to attend this session)'''
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− | Kerckhoff Room 101 : 1:30pm
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− | * WormBase ParaSite
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− | * Licence / formal data release policy
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− | * Incremental updates
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− | * Operational issues
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− | ** Revive GFF3 production/testing
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− | ** Representation of multiple assemblies for a single species (on web-site and FTP site)
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− | * Data freezes
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− | ** Frequency, extent, format
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− | * Web-site wish list(s)
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− | ** Mechanism to stage/review changes to static content without immediately publishing it to live site
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− | ** variation tracks
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− | ** New comparative genomics views (multiple alignments, gene trees)
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− | ==Monday 28th Jan ==
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− | === 9:00 - 9:15 Overview ===
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− | * Introduction: Where we are, grant status, etc - (Paul Sternberg; 15 min)
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− | === 9:15 - 10:30 Website / User interface ===
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− | * Site introduction; usage; web team accomplishments; objectives and milestones. (Todd; 20 minutes)
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− | * Tour of the new website (Abby; 20 minutes)
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− | * Intermine introduction, status, and goals (JD; 15 minutes)
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− | === 10:30 - 10:45 BREAK ===
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− | === 10:45 - 12:15 Sequence analysis and curation ===
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− | * Coping with the deluge of nematode sequence data (Kevin; 20 mins)
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− | * The 50 Helminth Genome Project (Matt B; 10 mins)
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− | * Transcriptomics data in WormBase
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− | ** RNASeq alignment and annotation pipeline (Gary W; 10 mins)
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− | ** SPELL (Wen; 10 mins)
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− | * Sequence curation - current status and future plans (Paul; 15 mins)
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− | * Annotation of Brugia malayi - a pilot study for future parasitologist community collaborations (Michael; 15 mins)
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− | === 12:15 - 13:30 LUNCH ===
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− | Morgan Library (second floor of Kerckhoff)
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− | === 13:30 - 15:30 Literature curation ===
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− | * Literature curation workflow and tools (Chris, 30)
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− | * Interactions (15)
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− | * Transcriptional Networks: Gene expression and regulation: Transcriptional Networks (Daniela 10; Xioadong 30)
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− | * Human Relevance - Orthologies (OMIM), Disease and Drugs (Ranjana,10)
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− | === 15:30 - 15:45 BREAK ===
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− | === 15:45 - 17:30 Curation Continued and Other topics ===
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− | * GO and LEGO (20)
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− | * Pathways [Karen, 20]
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− | * Discussion of Integrated Phenotype Curation (alleles, RNAi, transgenes, interactions, GO, cell function (10)
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− | * Biological data for other species
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− | ** Concise descriptions [Kimberly, Ranjana; 15]
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− | * Sequence Curation; Priorities for WormBase; Community Annotation; etc. (20)
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− | * Plans for retirement of the Acedb (Kevin/Todd; 15 mins)
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− | === 17:30 - Drinks and Dinner ===
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− | Morgan Library
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− | == Tuesday 29th Jan ==
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− | ===8:30 – 9:00 Advisors breakfast===
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− | ===9:30 – 12:00 Advisors summary report===
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− | Also: discussion of License for use.
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− | longterm use of Intermine
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− | ===12:00 – 13:00 LUNCH ===
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− | ===13:00 – 15:00 Post ABM Discussion===
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− | = Prior Meetings =
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| [[2011_Advisory_Board_Meeting | 2011 SAB Meeting]] | | [[2011_Advisory_Board_Meeting | 2011 SAB Meeting]] |