Difference between revisions of "WormBase SAB Meeting"

From WormBaseWiki
Jump to navigationJump to search
 
(9 intermediate revisions by 4 users not shown)
Line 1: Line 1:
<center><b>
 
<font size="5" color="Blue">[[WormBase_Consortium]] Scientific Advisory Board Meeting
 
  
[[File:Caltechlogo.gif|frame|none]]California Institute of Technology, January 27-29, 2013
+
= Meeting list =
</font>
+
[[2018_Advisory_Board_Meeting | 2018 SAB Meeting]]
</b></center>
 
__TOC__
 
  
===[[WormBase_Consortium#Scientific_Advisory_Board |Advisors list]]===
+
[[2016_Advisory_Board_Meeting | 2016 SAB Meeting]]
  
== Questions to address the Advisory Board ==
+
[[2014_Advisory_Board_Meeting | 2014 SAB Meeting]]
  
* How can we best handle the multiple nematode genomes, display the data and provide analytical tools to our users?
+
[[2013_Advisory_Board_Meeting | 2013 SAB Meeting]]
 
 
* How can we handle natural variation in C. elegans and other species?
 
 
 
* How can we display and analyze transcriptional regulatory networks?
 
 
 
* How can we best capture and display biological pathways?
 
 
 
* How can we best capture community annotation or help from the community?
 
 
 
* How do we make WormBase accessible and useful to human geneticists?
 
 
 
* How should we prioritize RNAi versus other gene function curation?
 
 
 
* How important are daily/weekly updates? How best to implement?
 
 
 
* How should we make use of microarray/RNA-seq data?
 
 
 
==Sunday 27th Jan – Pre-Meeting (WormBase central)==
 
 
 
'''(Advisory Board not required to attend this session)''' 
 
Kerckhoff Room 101 : 1:30pm
 
 
 
* WormBase ParaSite
 
* Licence / formal data release policy
 
* Incremental updates
 
* Operational issues
 
** Revive GFF3 production/testing
 
** Representation of multiple assemblies for a single species (on web-site and FTP site)
 
* Data freezes
 
** Frequency, extent, format
 
* Web-site wish list(s)
 
** Mechanism to stage/review changes to static content without immediately publishing it to live site
 
** variation tracks
 
** New comparative genomics views (multiple alignments, gene trees)
 
 
 
==Monday 28th Jan ==
 
 
 
=== 9:00 - 9:15 Overview ===
 
 
 
* Introduction: Where we are, grant status, etc - (Paul Sternberg; 15 min)
 
 
 
=== 9:15 - 10:30 Website / User interface ===
 
 
 
* Site introduction; usage; web team accomplishments; objectives and milestones. (Todd; 20 minutes)
 
* Tour of the new website (Abby; 20 minutes)   
 
* Intermine introduction, status, and goals (JD; 15 minutes)
 
 
 
=== 10:30 - 10:45 BREAK ===
 
 
 
=== 10:45 - 12:15 Sequence analysis and curation ===
 
 
 
* Coping with the deluge of nematode sequence data (Kevin; 20 mins)
 
* The 50 Helminth Genome Project (Matt B; 10 mins)
 
* Transcriptomics data in WormBase
 
** RNASeq alignment and annotation pipeline (Gary W; 10 mins)
 
** SPELL (Wen; 10 mins)
 
* Sequence curation - current status and future plans (Paul; 15 mins)
 
* Annotation of Brugia malayi - a pilot study for future parasitologist community collaborations (Michael; 15 mins)
 
 
 
=== 12:15 - 13:30 LUNCH === 
 
Morgan Library (second floor of Kerckhoff)
 
 
 
===  13:30 - 15:30 Literature curation ===
 
 
 
* Literature curation workflow and tools (Chris, 30)
 
* Interactions (15)
 
* Transcriptional Networks: Gene expression and regulation: Transcriptional Networks (Daniela 10; Xioadong 30)
 
* Human Relevance - Orthologies (OMIM), Disease and Drugs (Ranjana,10)
 
 
 
=== 15:30 - 15:45 BREAK ===
 
 
 
=== 15:45 - 17:30 Curation Continued and Other topics ===
 
* GO and LEGO (20)
 
* Pathways [Karen, 20]
 
* Discussion of Integrated Phenotype Curation (alleles, RNAi, transgenes, interactions, GO, cell function  (10)
 
* Biological data for other species
 
** Concise descriptions [Kimberly, Ranjana; 15]
 
* Sequence Curation; Priorities for WormBase;  Community Annotation; etc. (20)
 
* Plans for retirement of the Acedb (Kevin/Todd; 15 mins)
 
 
 
=== 17:30 -    Drinks and Dinner ===
 
Morgan Library
 
 
 
== Tuesday 29th Jan ==
 
 
 
===8:30 – 9:00 Advisors breakfast===
 
 
 
===9:30 – 12:00 Advisors summary report===
 
 
 
===12:00 – 13:00 LUNCH ===
 
 
 
===13:00 – 15:00 Post ABM Discussion===
 
 
 
 
 
 
 
= Prior Meetings =
 
  
 
[[2011_Advisory_Board_Meeting | 2011 SAB Meeting]]
 
[[2011_Advisory_Board_Meeting | 2011 SAB Meeting]]

Latest revision as of 12:39, 7 June 2018