WormBase Models

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The A - Z of WormBase Models

Sanger CVS models.wrm

WormBase Model:?2_point_data - Sanger

WormBase Model:?3d_data

WormBase Model:?Accession_number - Sanger

WormBase Model:?Analysis - This class is used along with ?Condition to store meta data about an experiment

WormBase Model:?Anatomy_function - Caltech

WormBase Model:?Anatomy_name - Caltech

WormBase Model:?Anatomy_term - Caltech

WormBase Model:?Antibody - Caltech

WormBase Model:?AO_code

WormBase Model:?Atlas - WORMBASE ATLAS (VIRTUAL WORM) - Ocir

WormBase Model:?Author - Caltech

WormBase Model:?Balancer

WormBase Model:?CDS - Sanger

WormBase Model:?Cell - Sanger/Caltech?

WormBase Model:?Cell_group - Sanger/Caltech?

WormBase Model:?Clone - Sanger

WormBase Model:?Condition

WormBase Model:?Contig - Sanger

WormBase Model:?Database - Sanger

WormBase Model:?Database_field - Sanger

WormBase Model:?Expression_cluster - Caltech

WormBase Model:?Expr_pattern - Caltech

WormBase Model:?Expr_profile - Caltech

WormBase Model:?Feature - Sanger

WormBase Model:?Feature_data - Sanger, Class of data used to mark up features on Transcript data

WormBase Model:?Gene - Sanger - Envelope for collecting/connecting data pertaining to a single gene

WormBase Model:?Gene_class - Sanger - Used for describing and grouping a family of genes

WormBase Model:?Gene_cluster - Sanger - Used to denote a cluster of genes of a specific type - not maintained?

WormBase Model:?Gene_name - Sanger

WormBase Model:?Gene_regulation - Caltech

WormBase Model:?Genetic_code - Sanger - Allows for alternate genetic codes for Mitocondria and selenocysteine.

WormBase Model:?GO_code - Caltech

WormBase Model:?GO_term - Caltech

WormBase Model:?Grid - Sanger

WormBase Model:?Grid_data - Sanger

WormBase Model:?Grid_row - Sanger

WormBase Model:?Homol_data - Sanger - Used for storing alignment data

WormBase Model:?Homology_group - Caltech

WormBase Model:?Interaction - Caltech

WormBase Model:?Interval_col_conf - ?

WormBase Model:?Jade - Acedb?

WormBase Model:?Lab_Location - Caltech

WormBase Model:?Laboratory - Caltech

WormBase Model:?Library - Sanger - libraries used for sequencing of nematode ESTs // Information to come from Mark Blaxters

WormBase Model:?Life_stage - Caltech

WormBase Model:?Locus - Sanger - This class is a reminent that should be cleaned up.

WormBase Model:?ManyMap - Sanger

WormBase Model:?Map - Sanger

WormBase Model:?Map_error - Sanger

WormBase Model:?Map_offset - Sanger

WormBase Model:?Map_position - Sanger

WormBase Model:?Mass_spec_experiment - Sanger

WormBase Model:?Mass_spec_peptide - Sanger

WormBase Model:?Method - AceDB class that details display etc. of objects in the other classes

WormBase Model:?Microarray - Caltech

WormBase Model:?Microarray_experiment - Caltech

WormBase Model:?Microarray_results - Caltech

WormBase Model:?Mixed_grid_row - Sanger

WormBase Model:?Molecule - Caltech

WormBase Model:?Motif - Sanger

WormBase Model:?Movie - Caltech

WormBase Model:?Multi_counts - Sanger?

WormBase Model:?MultiMap - ? Not used?

WormBase Model:?Multi_pt_data - Sanger

WormBase Model:?Neurodata - ? Not Used

WormBase Model:?Neuro_location - ? Not Used

WormBase Model:?Oligo

WormBase Model:?Oligo_set

WormBase Model:?Operon - Sanger - Stores genes that are in Operons

WormBase Model:?Paper - Caltech

WormBase Model:?PCR_product

WormBase Model:?Person - Caltech

WormBase Model:?Person_name - Caltech

WormBase Model:?Phenotype - Caltech

WormBase Model:?Phenotype_Assay - Caltech

WormBase Model:?Phenotype_name - Caltech

WormBase Model:?Picture - Caltech

WormBase Model:?Position_Matrix - Caltech

WormBase Model:?Pos_neg_data - Sanger

WormBase Model:?Protein - Sanger

WormBase Model:?Pseudogene - Sanger - Stores the Pseudogene models

WormBase Model:?Rearrangement - Caltech

WormBase Model:?ReconCellInfo - Ocir

WormBase Model:?Reconstruction - Ocir

WormBase Model:?Reference - Caltech

WormBase Model:?RNAi - Caltech

WormBase Model:?SAGE_experiment - Sanger

WormBase Model:?SAGE_tag - Sanger

WormBase Model:?Sequence - Sanger - A broad class for storing genomic, Transcripts Sequence etc.

WormBase Model:?SK_map - Caltech

WormBase Model:?SO_term - Caltech

WormBase Model:?Species - Sanger

WormBase Model:?Strain - Sanger

WormBase Model:?Structure_data - Ocir

WormBase Model:?Timepoint - Ocir

WormBase Model:?Transcript - Sanger - Stores RNAgenes and the Full length Coding_transcripts

WormBase Model:?Transgene - Caltech

WormBase Model:?Transposon - Sanger - Stores the Transposon span and S_child info

WormBase Model:?Transposon_family - Sanger - Used for grouping like ?Transposons

WormBase Model:?Variation - Sanger

WormBase Model:?Variation_name - Sanger

WormBase Model:?YH - Caltech