WormBase Models
The A - Z of WormBase Models
WormBase Model:?2_point_data - Sanger
WormBase Model:?Accession_number - Sanger
WormBase Model:?Analysis - This class is used along with ?Condition to store meta data about an experiment
WormBase Model:?Anatomy_function - Caltech
WormBase Model:?Anatomy_name - Caltech
WormBase Model:?Anatomy_term - Caltech
WormBase Model:?Antibody - Caltech
WormBase Model:?Atlas - WORMBASE ATLAS (VIRTUAL WORM) - Ocir
WormBase Model:?Author - Caltech
WormBase Model:?CDS - Sanger
WormBase Model:?Cell - Sanger/Caltech?
WormBase Model:?Cell_group - Sanger/Caltech?
WormBase Model:?Clone - Sanger
WormBase Model:?Contig - Sanger
WormBase Model:?Database - Sanger
WormBase Model:?Database_field - Sanger
WormBase Model:?Expression_cluster - Caltech
WormBase Model:?Expr_pattern - Caltech
WormBase Model:?Expr_profile - Caltech
WormBase Model:?Feature - Sanger
WormBase Model:?Feature_data - Sanger, Class of data used to mark up features on Transcript data
WormBase Model:?Gene - Sanger - Envelope for collecting/connecting data pertaining to a single gene
WormBase Model:?Gene_class - Sanger - Used for describing and grouping a family of genes
WormBase Model:?Gene_cluster - Sanger - Used to denote a cluster of genes of a specific type - not maintained?
WormBase Model:?Gene_name - Sanger
WormBase Model:?Gene_regulation - Caltech
WormBase Model:?Genetic_code - Sanger - Allows for alternate genetic codes for Mitocondria and selenocysteine.
WormBase Model:?GO_code - Caltech
WormBase Model:?GO_term - Caltech
WormBase Model:?Grid - Sanger
WormBase Model:?Grid_data - Sanger
WormBase Model:?Grid_row - Sanger
WormBase Model:?Homol_data - Sanger - Used for storing alignment data
WormBase Model:?Homology_group - Caltech
WormBase Model:?Interaction - Caltech
WormBase Model:?Interval_col_conf - ?
WormBase Model:?Jade - Acedb?
WormBase Model:?Lab_Location - Caltech
WormBase Model:?Laboratory - Caltech
WormBase Model:?Library - Sanger - libraries used for sequencing of nematode ESTs // Information to come from Mark Blaxters
WormBase Model:?Life_stage - Caltech
WormBase Model:?Locus - Sanger - This class is a reminent that should be cleaned up.
WormBase Model:?ManyMap - Sanger
WormBase Model:?Map - Sanger
WormBase Model:?Map_error - Sanger
WormBase Model:?Map_offset - Sanger
WormBase Model:?Map_position - Sanger
WormBase Model:?Mass_spec_experiment - Sanger
WormBase Model:?Mass_spec_peptide - Sanger
WormBase Model:?Method - AceDB class that details display etc. of objects in the other classes
WormBase Model:?Microarray - Caltech
WormBase Model:?Microarray_experiment - Caltech
WormBase Model:?Microarray_results - Caltech
WormBase Model:?Mixed_grid_row - Sanger
WormBase Model:?Molecule - Caltech
WormBase Model:?Motif - Sanger
WormBase Model:?Movie - Caltech
WormBase Model:?Multi_counts - Sanger?
WormBase Model:?MultiMap - ? Not used?
WormBase Model:?Multi_pt_data - Sanger
WormBase Model:?Neurodata - ? Not Used
WormBase Model:?Neuro_location - ? Not Used
WormBase Model:?Operon - Sanger - Stores genes that are in Operons
WormBase Model:?Paper - Caltech
WormBase Model:?Person - Caltech
WormBase Model:?Person_name - Caltech
WormBase Model:?Phenotype - Caltech
WormBase Model:?Phenotype_Assay - Caltech
WormBase Model:?Phenotype_name - Caltech
WormBase Model:?Picture - Caltech
WormBase Model:?Position_Matrix - Caltech
WormBase Model:?Pos_neg_data - Sanger
WormBase Model:?Protein - Sanger
WormBase Model:?Pseudogene - Sanger - Stores the Pseudogene models
WormBase Model:?Rearrangement - Caltech
WormBase Model:?ReconCellInfo - Ocir
WormBase Model:?Reconstruction - Ocir
WormBase Model:?Reference - Caltech
WormBase Model:?RNAi - Caltech
WormBase Model:?SAGE_experiment - Sanger
WormBase Model:?SAGE_tag - Sanger
WormBase Model:?Sequence - Sanger - A broad class for storing genomic, Transcripts Sequence etc.
WormBase Model:?SK_map - Caltech
WormBase Model:?SO_term - Caltech
WormBase Model:?Species - Sanger
WormBase Model:?Strain - Sanger
WormBase Model:?Structure_data - Ocir
WormBase Model:?Timepoint - Ocir
WormBase Model:?Transcript - Sanger - Stores RNAgenes and the Full length Coding_transcripts
WormBase Model:?Transgene - Caltech
WormBase Model:?Transposon - Sanger - Stores the Transposon span and S_child info
WormBase Model:?Transposon_family - Sanger - Used for grouping like ?Transposons
WormBase Model:?Variation - Sanger
WormBase Model:?Variation_name - Sanger
WormBase Model:?YH - Caltech