Difference between revisions of "WormBase Models"

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m (Edits made following feedback from Todd and Chris)
Line 12: Line 12:
 
|-
 
|-
 
| 1
 
| 1
−
|[[WormBase Model:?2_point_data]]
+
|[[WormBase Model:2_point_data|2_point_data]]
 
|Sanger
 
|Sanger
 
| ?
 
| ?
Line 18: Line 18:
 
|-
 
|-
 
| 2
 
| 2
−
| [[WormBase Model:?3d_data]]
+
| [[WormBase Model:3d_data|3d_data]]
 
| ?
 
| ?
 
| ?
 
| ?
Line 24: Line 24:
 
|-
 
|-
 
| 3
 
| 3
−
|[[WormBase Model:?Accession_number]]
+
|[[WormBase Model:Accession_number|Accession_number]]
 
| Sanger
 
| Sanger
 
| ?
 
| ?
Line 30: Line 30:
 
|-
 
|-
 
| 4
 
| 4
−
| [[WormBase Model:?Analysis]]
+
| [[WormBase Model:Analysis|Analysis]]
 
| ?
 
| ?
 
| This class is used along with ?Condition to store meta data about an experiment  
 
| This class is used along with ?Condition to store meta data about an experiment  
Line 36: Line 36:
 
|-
 
|-
 
| 5
 
| 5
−
| [[WormBase Model:?Anatomy_function]]
+
| [[WormBase Model:Anatomy_function|Anatomy_function]]
 
| Caltech
 
| Caltech
 
| ?
 
| ?
Line 42: Line 42:
 
|-
 
|-
 
| 6
 
| 6
−
| [[WormBase Model:?Anatomy_name]]
+
| [[WormBase Model:Anatomy_name|Anatomy_name]]
 
| Caltech
 
| Caltech
 
| ?
 
| ?
Line 48: Line 48:
 
|-
 
|-
 
| 7
 
| 7
−
| [[WormBase Model:?Anatomy_term]]
+
| [[WormBase Model:Anatomy_term|Anatomy_term]]
 
| Caltech
 
| Caltech
 
| ?
 
| ?
Line 54: Line 54:
 
|-
 
|-
 
| 8
 
| 8
−
| [[WormBase Model:?Antibody]]
+
| [[WormBase Model:Antibody|Antibody]]
 
| Caltech
 
| Caltech
 
| ?
 
| ?
Line 60: Line 60:
 
|-
 
|-
 
| 9
 
| 9
−
| [[WormBase Model:?AO_code]]
+
| [[WormBase Model:AO_code|AO_code]]
 
| ?
 
| ?
 
| ?
 
| ?
Line 66: Line 66:
 
|-
 
|-
 
| 10
 
| 10
−
| [[WormBase Model:?Atlas]]
+
| [[WormBase Model:Atlas|Atlas]]
−
| Ocir
+
| OICR
 
| WORMBASE ATLAS (VIRTUAL WORM)
 
| WORMBASE ATLAS (VIRTUAL WORM)
 
|
 
|
 
|-
 
|-
 
| 11
 
| 11
−
| [[WormBase Model:?Author]]
+
| [[WormBase Model:Author|Author]]
 
| Caltech
 
| Caltech
 
| ?
 
| ?
Line 78: Line 78:
 
|-
 
|-
 
| 12
 
| 12
−
| [[WormBase Model:?Balancer]]
+
| [[WormBase Model:Balancer|Balancer]]
 
| ?
 
| ?
 
| ?
 
| ?
Line 84: Line 84:
 
|-
 
|-
 
| 13
 
| 13
−
| [[WormBase Model:?CDS]]
+
| [[WormBase Model:CDS|CDS]]
 
| Sanger
 
| Sanger
 
| ?
 
| ?
Line 90: Line 90:
 
|-
 
|-
 
| 14
 
| 14
−
| [[WormBase Model:?Cell]]
+
| [[WormBase Model:Cell|Cell]]
 
| Sanger/Caltech?
 
| Sanger/Caltech?
 
| ?
 
| ?
Line 96: Line 96:
 
|-
 
|-
 
| 15
 
| 15
−
| [[WormBase Model:?Cell_group]]
+
| [[WormBase Model:Cell_group|Cell_group]]
 
| Sanger/Caltech?
 
| Sanger/Caltech?
 
| ?
 
| ?
Line 102: Line 102:
 
|-
 
|-
 
| 16
 
| 16
−
| [[WormBase Model:?Clone]]
+
| [[WormBase Model:Clone|Clone]]
 
| Sanger
 
| Sanger
 
| ?
 
| ?
Line 108: Line 108:
 
|-
 
|-
 
| 17
 
| 17
−
| [[WormBase Model:?Condition]]
+
| [[WormBase Model:Condition|Condition]]
 
| ?
 
| ?
 
| ?
 
| ?
Line 114: Line 114:
 
|-
 
|-
 
| 18
 
| 18
−
| [[WormBase Model:?Contig]]
+
| [[WormBase Model:Contig|Contig]]
 
| Sanger
 
| Sanger
 
| ?
 
| ?
Line 120: Line 120:
 
|-
 
|-
 
| 19
 
| 19
−
| [[WormBase Model:?Database]]
+
| [[WormBase Model:Database|Database]]
 
| Sanger
 
| Sanger
 
| ?
 
| ?
Line 126: Line 126:
 
|-
 
|-
 
| 20
 
| 20
−
| [[WormBase Model:?Database_field]]
+
| [[WormBase Model:Database_field|Database_field]]
 
| Sanger
 
| Sanger
 
| ?
 
| ?
Line 132: Line 132:
 
|-
 
|-
 
| 21
 
| 21
−
| [[WormBase Model:?Expression_cluster]]
+
| [[WormBase Model:Expression_cluster|Expression_cluster]]
 
| Caltech
 
| Caltech
 
| ?
 
| ?
Line 138: Line 138:
 
|-
 
|-
 
| 22
 
| 22
−
| [[WormBase Model:?Expr_pattern]]
+
| [[WormBase Model:Expr_pattern|Expr_pattern]]
 
| Caltech
 
| Caltech
 
| ?
 
| ?
Line 144: Line 144:
 
|-
 
|-
 
| 23
 
| 23
−
| [[WormBase Model:?Expr_profile]]
+
| [[WormBase Model:Expr_profile|Expr_profile]]
 
| Caltech
 
| Caltech
 
| ?
 
| ?
Line 150: Line 150:
 
|-
 
|-
 
| 24
 
| 24
−
| [[WormBase Model:?Feature]]
+
| [[WormBase Model:Feature|Feature]]
 
| Sanger
 
| Sanger
 
| ?
 
| ?
Line 156: Line 156:
 
|-
 
|-
 
| 25
 
| 25
−
| [[WormBase Model:?Feature_data]]
+
| [[WormBase Model:Feature_data| Feature_data|
 
| Sanger
 
| Sanger
 
| ?Class of data used to mark up features on Transcript data
 
| ?Class of data used to mark up features on Transcript data
Line 162: Line 162:
 
|-
 
|-
 
| 26
 
| 26
−
| [[WormBase Model:?Gene]]
+
| [[WormBase Model:Gene|Gene]]
 
| Sanger
 
| Sanger
 
| Envelope for collecting/connecting data pertaining to a single gene
 
| Envelope for collecting/connecting data pertaining to a single gene
Line 168: Line 168:
 
|-
 
|-
 
| 27
 
| 27
−
| [[WormBase Model:?Gene_class]]
+
| [[WormBase Model:Gene_class|Gene_class]]
 
| Sanger
 
| Sanger
 
| Used for describing and grouping a family of genes
 
| Used for describing and grouping a family of genes
Line 174: Line 174:
 
|-
 
|-
 
| 28
 
| 28
−
| [[WormBase Model:?Gene_cluster]]
+
| [[WormBase Model:Gene_cluster|Gene_cluster]]
 
| Sanger
 
| Sanger
 
| Used to denote a cluster of genes of a specific type - not maintained?
 
| Used to denote a cluster of genes of a specific type - not maintained?
Line 180: Line 180:
 
|-
 
|-
 
| 29
 
| 29
−
| [[WormBase Model:?Gene_name]]
+
| [[WormBase Model:Gene_name|Gene_name]]
 
| Sanger
 
| Sanger
 
| ?
 
| ?
Line 186: Line 186:
 
|-
 
|-
 
| 30
 
| 30
−
| [[WormBase Model:?Gene_regulation]]
+
| [[WormBase Model:Gene_regulation|Gene_regulation]]
 
| Caltech
 
| Caltech
 
| ?
 
| ?
Line 192: Line 192:
 
|-
 
|-
 
| 31
 
| 31
−
| [[WormBase Model:?Genetic_code]]
+
| [[WormBase Model:Genetic_code|Genetic_code]]
 
| Sanger
 
| Sanger
 
| Allows for alternate genetic codes for Mitocondria and selenocysteine.
 
| Allows for alternate genetic codes for Mitocondria and selenocysteine.
Line 198: Line 198:
 
|-
 
|-
 
| 32
 
| 32
−
| [[WormBase Model:?GO_code]]
+
| [[WormBase Model:GO_code|GO_code]]
 
| Caltech
 
| Caltech
 
| ?
 
| ?
Line 204: Line 204:
 
|-
 
|-
 
| 33
 
| 33
−
| [[WormBase Model:?GO_term]]
+
| [[WormBase Model:GO_term|GO_term]]
 
| Caltech
 
| Caltech
 
| ?
 
| ?
Line 210: Line 210:
 
|-
 
|-
 
| 34
 
| 34
−
| [[WormBase Model:?Grid]]
+
| [[WormBase Model:Grid|Grid]]
 
| Sanger
 
| Sanger
 
| ?
 
| ?
Line 216: Line 216:
 
|-
 
|-
 
| 35
 
| 35
−
| [[WormBase Model:?Grid_data]]
+
| [[WormBase Model:Grid_data|Grid_data]]
 
| Sanger
 
| Sanger
 
| ?
 
| ?
Line 222: Line 222:
 
|-
 
|-
 
| 36
 
| 36
−
| [[WormBase Model:?Grid_row]]
+
| [[WormBase Model:Grid_row|Grid_row]]
 
| Sanger
 
| Sanger
 
| ?
 
| ?
Line 228: Line 228:
 
|-
 
|-
 
| 37
 
| 37
−
| [[WormBase Model:?Homol_data]]
+
| [[WormBase Model:Homol_data|Homol_data]]
 
| Sanger
 
| Sanger
 
| Used for storing alignment data
 
| Used for storing alignment data
Line 234: Line 234:
 
|-
 
|-
 
| 38
 
| 38
−
| [[WormBase Model:?Homology_group]]
+
| [[WormBase Model:Homology_group|Homology_group]]
 
| Caltech
 
| Caltech
 
| ?
 
| ?
Line 240: Line 240:
 
|-
 
|-
 
| 39
 
| 39
−
| [[WormBase Model:?Interaction]]
+
| [[WormBase Model:Interaction|Interaction]]
 
| Caltech
 
| Caltech
 
| ?
 
| ?
Line 246: Line 246:
 
|-
 
|-
 
| 40
 
| 40
−
| [[WormBase Model:?Interval_col_conf]]
+
| [[WormBase Model:Interval_col_conf|Interval_col_conf]]
 
| ?
 
| ?
 
| ?
 
| ?
Line 252: Line 252:
 
|-
 
|-
 
| 41
 
| 41
−
| [[WormBase Model:?Jade]]
+
| [[WormBase Model:Jade|Jade]]
 
| Acedb?
 
| Acedb?
 
| ?
 
| ?
Line 258: Line 258:
 
|-
 
|-
 
| 42
 
| 42
−
| [[WormBase Model:?Lab_Location]]
+
| [[WormBase Model:Lab_Location|Lab_Location]]
 
| Caltech  
 
| Caltech  
 
| ?
 
| ?
Line 264: Line 264:
 
|-
 
|-
 
| 43
 
| 43
−
| [[WormBase Model:?Laboratory]]
+
| [[WormBase Model:Laboratory|Laboratory]]
 
| Caltech
 
| Caltech
 
| ?
 
| ?
Line 270: Line 270:
 
|-
 
|-
 
| 44
 
| 44
−
| [[WormBase Model:?Library]]
+
| [[WormBase Model:Library|Library]]
 
| Sanger
 
| Sanger
 
| libraries used for sequencing of nematode ESTs // Information to come from Mark Blaxters
 
| libraries used for sequencing of nematode ESTs // Information to come from Mark Blaxters
Line 276: Line 276:
 
|-
 
|-
 
| 45
 
| 45
−
| [[WormBase Model:?Life_stage]]
+
| [[WormBase Model:Life_stage|Life_stage]]
 
| Caltech
 
| Caltech
 
| ?
 
| ?
Line 282: Line 282:
 
|-
 
|-
 
| 46
 
| 46
−
| [[WormBase Model:?Locus]]
+
| [[WormBase Model:Locus|Locus]]
 
| Sanger
 
| Sanger
 
| This class is a reminent that should be cleaned up.
 
| This class is a reminent that should be cleaned up.
Line 288: Line 288:
 
|-
 
|-
 
| 47
 
| 47
−
| [[WormBase Model:?ManyMap]]
+
| [[WormBase Model:ManyMap|ManyMap]]
 
| Sanger
 
| Sanger
 
| ?
 
| ?
Line 294: Line 294:
 
|-
 
|-
 
| 48
 
| 48
−
| [[WormBase Model:?Map]]
+
| [[WormBase Model:Map|Map]]
 
| Sanger
 
| Sanger
 
| ?
 
| ?
Line 300: Line 300:
 
|-
 
|-
 
| 49
 
| 49
−
| [[WormBase Model:?Map_error]]
+
| [[WormBase Model:Map_error|Map_error]]
 
| Sanger
 
| Sanger
 
| ?
 
| ?
Line 306: Line 306:
 
|-
 
|-
 
| 50
 
| 50
−
| [[WormBase Model:?Map_offset]]
+
| [[WormBase Model:Map_offset|Map_offset]]
 
| Sanger
 
| Sanger
 
| ?
 
| ?
Line 312: Line 312:
 
|-
 
|-
 
| 51
 
| 51
−
| [[WormBase Model:?Map_position]]
+
| [[WormBase Model:Map_position|Map_position]]
 
| Sanger
 
| Sanger
 
| ?
 
| ?
Line 318: Line 318:
 
|-
 
|-
 
| 52
 
| 52
−
| [[WormBase Model:?Mass_spec_experiment]]
+
| [[WormBase Model:Mass_spec_experiment|Mass_spec_experiment]]
 
| Sanger
 
| Sanger
 
| ?
 
| ?
Line 324: Line 324:
 
|-
 
|-
 
| 53
 
| 53
−
| [[WormBase Model:?Mass_spec_peptide]]
+
| [[WormBase Model:Mass_spec_peptide|Mass_spec_peptide]]
 
| Sanger
 
| Sanger
 
| ?
 
| ?
Line 330: Line 330:
 
|-
 
|-
 
| 54
 
| 54
−
| [[WormBase Model:?Method]]
+
| [[WormBase Model:Method|Method]]
 
| ?
 
| ?
 
| AceDB class that details display etc. of objects in the other classes
 
| AceDB class that details display etc. of objects in the other classes
Line 336: Line 336:
 
|-
 
|-
 
| 55
 
| 55
−
| [[WormBase Model:?Microarray]]
+
| [[WormBase Model:Microarray|Microarray]]
 
| Caltech
 
| Caltech
 
| ?
 
| ?
Line 342: Line 342:
 
|-
 
|-
 
| 56
 
| 56
−
| [[WormBase Model:?Microarray_experiment]]
+
| [[WormBase Model:Microarray_experiment|Microarray_experiment]]
 
| Caltech
 
| Caltech
 
| ?
 
| ?
Line 348: Line 348:
 
|-
 
|-
 
| 57
 
| 57
−
| [[WormBase Model:?Microarray_results]]
+
| [[WormBase Model:Microarray_results|Microarray_results]]
 
| Caltech
 
| Caltech
 
| ?
 
| ?
Line 354: Line 354:
 
|-
 
|-
 
| 58
 
| 58
−
| [[WormBase Model:?Mixed_grid_row]]
+
| [[WormBase Model:Mixed_grid_row|Mixed_grid_row]]
 
| Sanger
 
| Sanger
 
| ?
 
| ?
Line 360: Line 360:
 
|-
 
|-
 
| 59
 
| 59
−
| [[WormBase Model:?Molecule]]
+
| [[WormBase Model:Molecule|Molecule]]
 
| Caltech
 
| Caltech
 
| ?
 
| ?
Line 366: Line 366:
 
|-
 
|-
 
| 60
 
| 60
−
| [[WormBase Model:?Motif]]
+
| [[WormBase Model:Motif|Motif]]
 
| Sanger
 
| Sanger
 
| ?
 
| ?
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|-
 
|-
 
| 61
 
| 61
−
| [[WormBase Model:?Movie]]
+
| [[WormBase Model:Movie|Movie]]
 
| Caltech
 
| Caltech
 
| ?
 
| ?
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|-
 
|-
 
| 62
 
| 62
−
| [[WormBase Model:?Multi_counts]]
+
| [[WormBase Model:Multi_counts|Multi_counts]]
 
| Sanger?
 
| Sanger?
 
| ?
 
| ?
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|-
 
|-
 
| 63
 
| 63
−
| [[WormBase Model:?MultiMap]]
+
| [[WormBase Model:MultiMap|MultiMap]]
 
| ?
 
| ?
 
| Not used?
 
| Not used?
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|-
 
|-
 
| 64
 
| 64
−
| [[WormBase Model:?Multi_pt_data]]
+
| [[WormBase Model:Multi_pt_data|Multi_pt_data]]
 
| Sanger
 
| Sanger
 
| ?
 
| ?
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|-
 
|-
 
| 65
 
| 65
−
| [[WormBase Model:?Neurodata]]
+
| [[WormBase Model:Neurodata|Neurodata]]
 
| ?
 
| ?
 
| ?Not Used
 
| ?Not Used
Line 402: Line 402:
 
|-
 
|-
 
| 66
 
| 66
−
| [[WormBase Model:?Neuro_location]]
+
| [[WormBase Model:Neuro_location|Neuro_location]]
 
| ?
 
| ?
 
| ? Not Used
 
| ? Not Used
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|-
 
|-
 
| 67
 
| 67
−
| [[WormBase Model:?Oligo]]
+
| [[WormBase Model:Oligo|Oligo]]
 
| ?
 
| ?
 
| ?
 
| ?
Line 414: Line 414:
 
|-
 
|-
 
| 68
 
| 68
−
| [[WormBase Model:?Oligo_set]]
+
| [[WormBase Model:Oligo_set|Oligo_set]]
 
| ?
 
| ?
 
| ?
 
| ?
Line 420: Line 420:
 
|-
 
|-
 
| 69
 
| 69
−
| [[WormBase Model:?Operon]]
+
| [[WormBase Model:Operon|Operon]]
 
| Sanger
 
| Sanger
 
| Stores genes that are in Operons
 
| Stores genes that are in Operons
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|-
 
|-
 
| 70
 
| 70
−
| [[WormBase Model:?Paper]]
+
| [[WormBase Model:Paper|Paper]]
 
| Caltech
 
| Caltech
 
| ?
 
| ?
Line 432: Line 432:
 
|-
 
|-
 
| 71
 
| 71
−
| [[WormBase Model:?PCR_product]]
+
| [[WormBase Model:PCR_product|PCR_product]]
 
| ?
 
| ?
 
| ?
 
| ?
Line 438: Line 438:
 
|-
 
|-
 
| 72
 
| 72
−
| [[WormBase Model:?Person]]
+
| [[WormBase Model:Person|Person]]
 
| Caltech
 
| Caltech
 
| ?
 
| ?
Line 444: Line 444:
 
|-
 
|-
 
| 73
 
| 73
−
| [[WormBase Model:?Person_name]]
+
| [[WormBase Model:Person_name|Person_name]]
 
| Caltech
 
| Caltech
 
| ?
 
| ?
Line 450: Line 450:
 
|-
 
|-
 
| 74
 
| 74
−
| [[WormBase Model:?Phenotype]]
+
| [[WormBase Model:Phenotype|Phenotype]]
 
| Caltech
 
| Caltech
 
| ?
 
| ?
Line 456: Line 456:
 
|-
 
|-
 
| 75
 
| 75
−
| [[WormBase Model:?Phenotype_Assay]]
+
| [[WormBase Model:Phenotype_Assay|Phenotype_Assay]]
 
| Caltech
 
| Caltech
 
| ?
 
| ?
Line 462: Line 462:
 
|-
 
|-
 
| 76
 
| 76
−
| [[WormBase Model:?Phenotype_name]]
+
| [[WormBase Model:Phenotype_name|Phenotype_name]]
 
| Caltech
 
| Caltech
 
| ?
 
| ?
Line 468: Line 468:
 
|-
 
|-
 
| 77
 
| 77
−
| [[WormBase Model:?Picture]]
+
| [[WormBase Model:Picture|Picture]]
 
| Caltech
 
| Caltech
 
| ?
 
| ?
Line 474: Line 474:
 
|-
 
|-
 
| 78
 
| 78
−
| [[WormBase Model:?Position_Matrix]]
+
| [[WormBase Model:Position_Matrix|Position_Matrix]]
 
| Caltech
 
| Caltech
 
| ?
 
| ?
Line 480: Line 480:
 
|-
 
|-
 
| 79
 
| 79
−
| [[WormBase Model:?Pos_neg_data]]
+
| [[WormBase Model:Pos_neg_data|Pos_neg_data]]
 
| Sanger
 
| Sanger
 
| ?
 
| ?
Line 486: Line 486:
 
|-
 
|-
 
| 80
 
| 80
−
| [[WormBase Model:?Protein]]
+
| [[WormBase Model:Protein|Protein]]
 
| Sanger
 
| Sanger
 
| ?
 
| ?
Line 492: Line 492:
 
|-
 
|-
 
| 81
 
| 81
−
| [[WormBase Model:?Pseudogene]]
+
| [[WormBase Model:Pseudogene|Pseudogene]]
 
| Sanger
 
| Sanger
 
| Stores the Pseudogene models
 
| Stores the Pseudogene models
Line 498: Line 498:
 
|-
 
|-
 
| 82
 
| 82
−
| [[WormBase Model:?Rearrangement]]
+
| [[WormBase Model:Rearrangement|Rearrangement]]
 
| Caltech
 
| Caltech
 
| ?
 
| ?
Line 504: Line 504:
 
|-
 
|-
 
| 83
 
| 83
−
| [[WormBase Model:?ReconCellInfo]]
+
| [[WormBase Model:ReconCellInfo|ReconCellInfo]]
−
| Ocir
+
| OICR
 
| ?
 
| ?
 
|
 
|
 
|-
 
|-
 
| 84
 
| 84
−
| [[WormBase Model:?Reconstruction]]
+
| [[WormBase Model:Reconstruction|Reconstruction]]
−
| Ocir
+
| OICR
 
| ?
 
| ?
 
|
 
|
 
|-
 
|-
 
| 85
 
| 85
−
| [[WormBase Model:?Reference]]
+
| [[WormBase Model:Reference|Reference]]
 
| Caltech
 
| Caltech
 
| ?
 
| ?
Line 522: Line 522:
 
|-
 
|-
 
| 86
 
| 86
−
| [[WormBase Model:?RNAi]]
+
| [[WormBase Model:RNAi|RNAi]]
 
| Caltech
 
| Caltech
 
| ?
 
| ?
Line 528: Line 528:
 
|-
 
|-
 
| 87
 
| 87
−
| [[WormBase Model:?SAGE_experiment]]
+
| [[WormBase Model:SAGE_experiment|SAGE_experiment]]
 
| Sanger
 
| Sanger
 
| ?
 
| ?
Line 534: Line 534:
 
|-
 
|-
 
| 88
 
| 88
−
| [[WormBase Model:?SAGE_tag]]
+
| [[WormBase Model:SAGE_tag|SAGE_tag]]
 
| Sanger
 
| Sanger
 
| ?
 
| ?
Line 540: Line 540:
 
|-
 
|-
 
| 89
 
| 89
−
| [[WormBase Model:?Sequence]]
+
| [[WormBase Model:Sequence|Sequence]]
 
| Sanger
 
| Sanger
 
| A broad class for storing genomic, Transcripts Sequence etc.  
 
| A broad class for storing genomic, Transcripts Sequence etc.  
Line 546: Line 546:
 
|-
 
|-
 
| 90
 
| 90
−
| [[WormBase Model:?SK_map]]
+
| [[WormBase Model:SK_map|SK_map]]
 
| Caltech
 
| Caltech
 
| ?
 
| ?
Line 552: Line 552:
 
|-
 
|-
 
| 91
 
| 91
−
| [[WormBase Model:?SO_term]]
+
| [[WormBase Model:SO_term|SO_term]]
 
| Caltech
 
| Caltech
 
| ?
 
| ?
Line 558: Line 558:
 
|-
 
|-
 
| 92
 
| 92
−
| [[WormBase Model:?Species]]
+
| [[WormBase Model:Species|Species]]
 
| Sanger
 
| Sanger
 
| ?
 
| ?
Line 564: Line 564:
 
|-
 
|-
 
| 93
 
| 93
−
| [[WormBase Model:?Strain]]
+
| [[WormBase Model:Strain|Strain]]
 
| Sanger
 
| Sanger
 
| ?
 
| ?
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|-
 
|-
 
| 94
 
| 94
−
| [[WormBase Model:?Structure_data]]
+
| [[WormBase Model:Structure_data|Structure_data]]
−
| Ocir
+
| OICR
 
| ?
 
| ?
 
|
 
|
 
|-
 
|-
 
| 95
 
| 95
−
| [[WormBase Model:?Timepoint]]
+
| [[WormBase Model:Timepoint|Timepoint]]
−
| Ocir
+
| OICR
 
| ?
 
| ?
 
|
 
|
 
|-
 
|-
 
| 96
 
| 96
−
| [[WormBase Model:?Transcript]]
+
| [[WormBase Model:Transcript|Transcript]]
 
| Sanger
 
| Sanger
 
| Stores RNAgenes and the Full length Coding_transcripts
 
| Stores RNAgenes and the Full length Coding_transcripts
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|-
 
|-
 
| 97
 
| 97
−
| [[WormBase Model:?Transgene]]
+
| [[WormBase Model:Transgene|Transgene]]
 
| Caltech
 
| Caltech
 
| ?
 
| ?
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|-
 
|-
 
| 98
 
| 98
−
| [[WormBase Model:?Transposon]]
+
| [[WormBase Model:Transposon|Transposon]]
 
| Sanger
 
| Sanger
 
| Stores the Transposon span and S_child info
 
| Stores the Transposon span and S_child info
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|-
 
|-
 
| 99
 
| 99
−
| [[WormBase Model:?Transposon_family]]
+
| [[WormBase Model:Transposon_family|Transposon_family]]
 
| Sanger
 
| Sanger
 
| Used for grouping like ?Transposons
 
| Used for grouping like ?Transposons
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|-
 
|-
 
| 100
 
| 100
−
| [[WormBase Model:?Variation]]
+
| [[WormBase Model:Variation|Variation]]
 
| Sanger
 
| Sanger
 
| ?
 
| ?
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|-
 
|-
 
| 101
 
| 101
−
| [[WormBase Model:?Variation_name]]
+
| [[WormBase Model:Variation_name|Variation_name]]
 
| Sanger
 
| Sanger
 
| ?
 
| ?
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|-
 
|-
 
| 102
 
| 102
−
| [[WormBase Model:?YH]]
+
| [[WormBase Model:YH|YH]]
 
| Caltech
 
| Caltech
 
| ?
 
| ?
 
|
 
|
 
|}
 
|}

Revision as of 08:33, 6 July 2010

The A - Z of WormBase Models

Sanger CVS models.wrm

No. Class Institute Comment/Brief Description Curator(s)
1 2_point_data Sanger ?
2 3d_data ? ?
3 Accession_number Sanger ?
4 Analysis ? This class is used along with ?Condition to store meta data about an experiment
5 Anatomy_function Caltech ?
6 Anatomy_name Caltech ?
7 Anatomy_term Caltech ?
8 Antibody Caltech ?
9 AO_code ? ?
10 Atlas OICR WORMBASE ATLAS (VIRTUAL WORM)
11 Author Caltech ?
12 Balancer ? ?
13 CDS Sanger ? Paul Davis + others
14 Cell Sanger/Caltech? ?
15 Cell_group Sanger/Caltech? ?
16 Clone Sanger ?
17 Condition ? ?
18 Contig Sanger ?
19 Database Sanger ?
20 Database_field Sanger ?
21 Expression_cluster Caltech ?
22 Expr_pattern Caltech ?
23 Expr_profile Caltech ?
24 Feature Sanger ? Paul Davis Mary Anne
25 [[WormBase Model:Feature_data| Feature_data| Sanger ?Class of data used to mark up features on Transcript data
26 Gene Sanger Envelope for collecting/connecting data pertaining to a single gene Mary Ann
27 Gene_class Sanger Used for describing and grouping a family of genes Mary Ann
28 Gene_cluster Sanger Used to denote a cluster of genes of a specific type - not maintained?
29 Gene_name Sanger ?
30 Gene_regulation Caltech ?
31 Genetic_code Sanger Allows for alternate genetic codes for Mitocondria and selenocysteine.
32 GO_code Caltech ?
33 GO_term Caltech ?
34 Grid Sanger ?
35 Grid_data Sanger ?
36 Grid_row Sanger ?
37 Homol_data Sanger Used for storing alignment data
38 Homology_group Caltech ?
39 Interaction Caltech ?
40 Interval_col_conf ? ?
41 Jade Acedb? ?
42 Lab_Location Caltech ?
43 Laboratory Caltech ?
44 Library Sanger libraries used for sequencing of nematode ESTs // Information to come from Mark Blaxters
45 Life_stage Caltech ?
46 Locus Sanger This class is a reminent that should be cleaned up.
47 ManyMap Sanger ?
48 Map Sanger ?
49 Map_error Sanger ?
50 Map_offset Sanger ?
51 Map_position Sanger ?
52 Mass_spec_experiment Sanger ? Gary Williams
53 Mass_spec_peptide Sanger ? Gary Williams
54 Method ? AceDB class that details display etc. of objects in the other classes
55 Microarray Caltech ?
56 Microarray_experiment Caltech ?
57 Microarray_results Caltech ?
58 Mixed_grid_row Sanger ?
59 Molecule Caltech ?
60 Motif Sanger ?
61 Movie Caltech ?
62 Multi_counts Sanger? ?
63 MultiMap ? Not used?
64 Multi_pt_data Sanger ?
65 Neurodata ? ?Not Used
66 Neuro_location ? ? Not Used
67 Oligo ? ?
68 Oligo_set ? ?
69 Operon Sanger Stores genes that are in Operons Paul Davis
70 Paper Caltech ?
71 PCR_product ? ?
72 Person Caltech ?
73 Person_name Caltech ?
74 Phenotype Caltech ?
75 Phenotype_Assay Caltech ?
76 Phenotype_name Caltech ?
77 Picture Caltech ?
78 Position_Matrix Caltech ?
79 Pos_neg_data Sanger ?
80 Protein Sanger ?
81 Pseudogene Sanger Stores the Pseudogene models
82 Rearrangement Caltech ?
83 ReconCellInfo OICR ?
84 Reconstruction OICR ?
85 Reference Caltech ?
86 RNAi Caltech ?
87 SAGE_experiment Sanger ?
88 SAGE_tag Sanger ?
89 Sequence Sanger A broad class for storing genomic, Transcripts Sequence etc.
90 SK_map Caltech ?
91 SO_term Caltech ?
92 Species Sanger ?
93 Strain Sanger ?
94 Structure_data OICR ?
95 Timepoint OICR ?
96 Transcript Sanger Stores RNAgenes and the Full length Coding_transcripts
97 Transgene Caltech ?
98 Transposon Sanger Stores the Transposon span and S_child info Paul Davis
99 Transposon_family Sanger Used for grouping like ?Transposons Paul Davis
100 Variation Sanger ? Mary Ann
101 Variation_name Sanger ?
102 YH Caltech ?
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