Difference between revisions of "WormBase Model:Transposon"

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(Created page with '__TOC__ WormBase Models == Curator Comments/Description == == Model == <pre> </pre> == Proposed Changes ==')
 
 
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== Model ==
 
== Model ==
 
<pre>
 
<pre>
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///////////////////////////////////////////////////////////////////////////
 +
//
 +
// ?Transposon class [020128 dl]
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//
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///////////////////////////////////////////////////////////////////////////
 +
 +
 +
?Transposon Evidence #Evidence
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            SMap S_parent UNIQUE Sequence UNIQUE ?Sequence XREF Transposon
 +
            Structure    S_child CDS_child ?CDS XREF Transposon UNIQUE Int UNIQUE Int #SMap_info // Transposon_CDSs will now link to parent Transposons ar2 02-DEC-05 
 +
                                  Pseudogene_child ?Pseudogene XREF Transposon UNIQUE Int UNIQUE Int #SMap_info
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                                  LTR_region Int UNIQUE Int
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            Origin Species UNIQUE ?Species
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                  From_laboratory UNIQUE ?Laboratory
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                  Member_of ?Transposon_family XREF Family_members
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                  Old_Name ?Text #Evidence        //to store old Transposon name
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                  Copy_status UNIQUE Full #Evidence    //track if the transposon is essentially complete or a fragment.
 +
                                      Partial #Evidence
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            Visible Remark ?Text #Evidence
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            Associated_feature ?Feature XREF Associated_with_transposon #Evidence
 +
            Method UNIQUE ?Method
  
 
</pre>
 
</pre>
  
 
== Proposed Changes ==
 
== Proposed Changes ==
 +
==Unused tags==
 +
Evidence
 +
 +
Associated_feature
 +
 +
LTR_region

Latest revision as of 09:51, 5 October 2010

WormBase Models

Curator Comments/Description

Model

///////////////////////////////////////////////////////////////////////////
//
// ?Transposon class [020128 dl]
//
///////////////////////////////////////////////////////////////////////////


?Transposon Evidence #Evidence
            SMap S_parent UNIQUE Sequence UNIQUE ?Sequence XREF Transposon
            Structure     S_child CDS_child ?CDS XREF Transposon UNIQUE Int UNIQUE Int #SMap_info // Transposon_CDSs will now link to parent Transposons ar2 02-DEC-05   
                                  Pseudogene_child ?Pseudogene XREF Transposon UNIQUE Int UNIQUE Int #SMap_info
                                  LTR_region Int UNIQUE Int
            Origin Species UNIQUE ?Species
                   From_laboratory UNIQUE ?Laboratory
                   Member_of ?Transposon_family XREF Family_members
                   Old_Name ?Text #Evidence        //to store old Transposon name
                   Copy_status UNIQUE Full #Evidence    //track if the transposon is essentially complete or a fragment.
                                      Partial #Evidence
            Visible Remark ?Text #Evidence
            Associated_feature ?Feature XREF Associated_with_transposon #Evidence
            Method UNIQUE ?Method

Proposed Changes

Unused tags

Evidence

Associated_feature

LTR_region