WormBase Model:Transgene

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Curator Comments/Description

Model

///////////////////////////////////////////////////////////////////////////////
//Transgene class from Wen Chen 12/00
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?Transgene      Summary UNIQUE ?Text //Searchable description of the transgene
                Synonym ?Text //for alternative names 
                Driven_by Driven_by_gene           ?Gene XREF Drives_transgene
                          Driven_by_construct      ?Text //for artificial promoters     
                Reporter_product GFP
                                 YFP //Added by Wen
                                 CFP //Added by Wen
                                 Venus //Added by Wen
                                 DsRed //Added by Wen
                                 mCherry //Added by Wen
                                 RFP //Added by Wen
                                 LacZ
                                 Other_reporter ?Text
                                 Gene ?Gene XREF Transgene_product Text
                Isolation Author ?Author
                          Clone ?Clone XREF Transgene Text //injected clone conc.
                          Fragment Text Text //injected DNA fragment conc. 
                          Injected_into_CGC_strain ?Strain
                          Injected_into Text    // for strains not available in CGC
                          Integrated_by UNIQUE Gamma_ray
                                               X_ray
                                               Spontaneous
                                               UV
                                               Particle_bombardment
                                               Not_integrated
                                               Other_integration_method Text 
                Location ?Laboratory #Lab_Location //Which Labs have the transgene.
                Strain ?Strain XREF Transgene //All strains in CGC with the transgene.
                Map ?Map  #Map_position 
                Map_evidence #Evidence //For wen - many papers refer to Transgene. This will allow curators to track which is used.
                Mapping_data 2_point ?2_point_data 
                             Multi_point ?Multi_pt_data
                Phenotype ?Phenotype XREF Transgene #Phenotype_info // [2006-04-20 ar2] changed for Carols Phenotype changes
                Phenotype_not_observed ?Phenotype XREF Not_in_Transgene #Phenotype_info  //added by Wen to separate Not phenotype from real phenotypes
                Rescue ?Gene XREF Rescued_by_Transgene ?Variation XREF Rescued_by_Transgene
                Expr_pattern ?Expr_pattern XREF Transgene                                        // Related Expr_pattern
                Marker_for   ?Text #Evidence //Marker Summary
                Marked_rearrangement ?Rearrangement XREF By_transgene
                Gene_regulation ?Gene_regulation XREF Transgene
                Interactor ?Interaction
                Reference ?Paper XREF Transgene                                                  // papers refered to the transgene.
                Species UNIQUE ?Species                                                          // added by krb for consistency with other classes 021030
                Remark ?Text #Evidence                                                           // More comments on the transgene
                Supporting_data Movie ?Movie XREF Transgene #Evidence
                                Picture ?Picture XREF Transgene #Evidence

Proposed Changes

Unused tags

2_point

Rescue

Supporting_data

Movie

Picture