Difference between revisions of "WormBase Model:Transgene"
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== Curator Comments/Description == | == Curator Comments/Description == | ||
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Revision as of 17:43, 31 March 2011
Contents
Curator Comments/Description
Proposed Updated Model 03 March 2011
/////////////////////////////////////////////////////////////////////////////// //Proposed Transgene class 03/11 /////////////////////////////////////////////////////////////////////////////// ?Transgene Summary UNIQUE ?Text //Searchable description of the transgene Synonym ?Text //for alternative names Driven_by Driven_by_gene ?Gene XREF Drives_transgene Driven_by_construct ?Text //for artificial promoters Reporter_product Reporter ?Text Gene ?Gene XREF Transgene_product Text //reporter gene Transgene_type ?Text // Transcriptional fusion or Translational fusion Construction (Isolation) Fragment Text ?Text //injected DNA fragment conc. (?) Coinjected_with Coinjection_marker ?Transgene XREF Transgene Integrated_by UNIQUE ?Text //the integration method Location ?Laboratory #Lab_Location //Which lab produced the transgene, assigned automatically based on allele lab designation Author ?Author //Authors who created the transgene Genetic_information Map ?Map #Map_position //map position Map_evidence #Evidence //For wen - many papers refer to Transgene. This will allow curators to track which is used for mapping Mapping_data 2_point ?2_point_data Multi_point ?Multi_pt_data Phenotype ?Phenotype XREF Transgene #Phenotype_info // [2006-04-20 ar2] changed for Carol's Phenotype changes Phenotype_not_observed ?Phenotype XREF Not_in_Transgene #Phenotype_info //added by Wen separates Not phenotype from phenotype Used_for Rescue ?Gene XREF Rescued_by_Transgene ?Variation XREF Rescued_by_Transgene //if the transgene rescue a mutant Expr_pattern ?Expr_pattern XREF Transgene //If the transgene is used for Expr_pattern Marker_for ?Text #Evidence //if the transgene is used as a tissue specific marker. Gene_regulation ?Gene_regulation XREF Transgene //if the transgene is used for gene regulation assay Interactor ?Interaction //If the transgene is involved in interaction Coinjection_marker Coinjected_with ?Transgene XREF Transgene //not dumped, people do not use proper name Associated_with Marked_rearrangement ?Rearrangement XREF By_transgene Clone ?Clone XREF Transgene Text //injected clone conc.(?) Strain ?Strain XREF Transgene //All strains with the transgene. **REMOVE?? transgenes XREF in Strain, only CGC strains will show** Reference ?Paper XREF Transgene // papers referring to transgene. Species UNIQUE ?Species // added by krb for consistency with other classes 021030 Remark ?Text #Evidence // More comments on the transgene
Current Model 03 March 2011
/////////////////////////////////////////////////////////////////////////////// //Transgene class from Wen Chen 12/00 /////////////////////////////////////////////////////////////////////////////// ?Transgene Summary UNIQUE ?Text //Searchable description of the transgene Synonym ?Text //for alternative names Driven_by Driven_by_gene ?Gene XREF Drives_transgene Driven_by_construct ?Text //for artificial promoters Reporter_product GFP //The following tags describe the reporter products YFP CFP Venus DsRed mCherry RFP LacZ Other_reporter ?Text Gene ?Gene XREF Transgene_product Text //reporter gene Isolation Author ?Author //Authors who created the transgene Clone ?Clone XREF Transgene Text //injected clone conc. Fragment Text Text //injected DNA fragment conc. Injected_into_CGC_strain ?Strain Injected_into Text // for strains not available in CGC Integrated_by UNIQUE Gamma_ray //this is the integration method X_ray Spontaneous UV Particle_bombardment Not_integrated Other_integration_method Text Location ?Laboratory #Lab_Location //Which Labs have the transgene. Strain ?Strain XREF Transgene //All strains in CGC with the transgene. Map ?Map #Map_position //map position Map_evidence #Evidence //For wen - many papers refer to Transgene, this allows curators to track which is used for mapping Mapping_data 2_point ?2_point_data Multi_point ?Multi_pt_data Phenotype ?Phenotype XREF Transgene #Phenotype_info // [2006-04-20 ar2] changed for Carols Phenotype changes Phenotype_not_observed ?Phenotype XREF Not_in_Transgene #Phenotype_info //added by Wen separates Not phenotype from phenotype Rescue ?Gene XREF Rescued_by_Transgene ?Variation XREF Rescued_by_Transgene //if the transgene rescue a mutant Expr_pattern ?Expr_pattern XREF Transgene //If the transgene is used for Expr_pattern Marker_for ?Text #Evidence //if the transgene is used as a tissue specific marker. Marked_rearrangement ?Rearrangement XREF By_transgene Gene_regulation ?Gene_regulation XREF Transgene //if the transgenes is used for gene regulation assy Interactor ?Interaction //If the transgene is involved in interaction Reference ?Paper XREF Transgene // papers refered to the transgene. Species UNIQUE ?Species // added by krb for consistency with other classes 021030 Remark ?Text #Evidence // More comments on the transgene Supporting_data Movie ?Movie XREF Transgene #Evidence Picture ?Picture XREF Transgene #Evidence
Proposed Changes
Unused tags
2_point
Rescue
Supporting_data
Movie
Picture