Difference between revisions of "WormBase Model:Transgene"
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?Transgene Summary UNIQUE ?Text //Searchable description of the transgene | ?Transgene Summary UNIQUE ?Text //Searchable description of the transgene | ||
Synonym ?Text //for alternative names | Synonym ?Text //for alternative names | ||
− | Driven_by Driven_by_gene ?Gene XREF Drives_transgene | + | Driven_by Driven_by_gene ?Gene XREF Drives_transgene |
Driven_by_construct ?Text //for artificial promoters | Driven_by_construct ?Text //for artificial promoters | ||
− | Reporter_product Reporter ?Text | + | Reporter_product Reporter ?Text |
Gene ?Gene XREF Transgene_product Text //reporter gene | Gene ?Gene XREF Transgene_product Text //reporter gene | ||
− | Isolation Author ?Author //Authors who created the transgene | + | Construction (Isolation) |
− | + | **obsolete?** Author ?Author //Authors who created the transgene | |
− | Fragment Text Text //injected DNA fragment conc. | + | Fragment Text ?Text //injected DNA fragment conc. |
Injected_into_CGC_strain ?Strain | Injected_into_CGC_strain ?Strain | ||
− | Injected_into Text // | + | Injected_into Text // genotypes of strains (not available in CGC?) |
Integrated_by UNIQUE ?Text //the integration method | Integrated_by UNIQUE ?Text //the integration method | ||
− | Location ?Laboratory #Lab_Location //Which | + | (Source) Location ?Laboratory #Lab_Location //Which lab produced the transgene, this is generally assigned automatically based on allele lab designation |
− | + | Genetic_information Map ?Map #Map_position //map position | |
− | Map ?Map #Map_position //map position | + | Map_evidence #Evidence //For wen - many papers refer to Transgene. This will allow curators to track which is used for mapping |
− | + | Mapping_data 2_point ?2_point_data | |
− | + | Multi_point ?Multi_pt_data | |
− | + | Phenotype ?Phenotype XREF Transgene #Phenotype_info // [2006-04-20 ar2] changed for Carols Phenotype changes | |
− | + | Phenotype_not_observed ?Phenotype XREF Not_in_Transgene #Phenotype_info //added by Wen to separate Not phenotype from real phenotypes | |
− | + | Used_for Rescue ?Gene XREF Rescued_by_Transgene ?Variation XREF Rescued_by_Transgene //if the transgene rescue a mutant | |
− | Rescue ?Gene XREF Rescued_by_Transgene ?Variation XREF Rescued_by_Transgene //if the transgene rescue a mutant | + | Expr_pattern ?Expr_pattern XREF Transgene //If the transgene is used for Expr_pattern |
− | + | Marker_for ?Text #Evidence //if the transgene is used as a tissue specific marker. | |
− | + | Gene_regulation ?Gene_regulation XREF Transgene //if the transgenes is used for gene regulation assy | |
− | + | Interactor ?Interaction //If the transgene is involved in interaction | |
− | + | Associated_with Marked_rearrangement ?Rearrangement XREF By_transgene | |
− | + | Clone ?Clone XREF Transgene Text //injected clone conc. | |
− | Reference ?Paper XREF Transgene // papers | + | Strain ?Strain XREF Transgene //All strains with the transgene. **can make sure to only dump strains in CGC or dump all- have webteam highlight CGC ones** |
+ | Reference ?Paper XREF Transgene // papers referring to transgene. | ||
Species UNIQUE ?Species // added by krb for consistency with other classes 021030 | Species UNIQUE ?Species // added by krb for consistency with other classes 021030 | ||
Remark ?Text #Evidence // More comments on the transgene | Remark ?Text #Evidence // More comments on the transgene | ||
</pre> | </pre> | ||
− | |||
== Current Model 03 March 2011== | == Current Model 03 March 2011== |
Revision as of 17:38, 10 March 2011
Contents
Curator Comments/Description
Proposed Updated Model 03 March 2011
/////////////////////////////////////////////////////////////////////////////// //Transgene class from Wen Chen 12/00 /////////////////////////////////////////////////////////////////////////////// ?Transgene Summary UNIQUE ?Text //Searchable description of the transgene Synonym ?Text //for alternative names Driven_by Driven_by_gene ?Gene XREF Drives_transgene Driven_by_construct ?Text //for artificial promoters Reporter_product Reporter ?Text Gene ?Gene XREF Transgene_product Text //reporter gene Construction (Isolation) **obsolete?** Author ?Author //Authors who created the transgene Fragment Text ?Text //injected DNA fragment conc. Injected_into_CGC_strain ?Strain Injected_into Text // genotypes of strains (not available in CGC?) Integrated_by UNIQUE ?Text //the integration method (Source) Location ?Laboratory #Lab_Location //Which lab produced the transgene, this is generally assigned automatically based on allele lab designation Genetic_information Map ?Map #Map_position //map position Map_evidence #Evidence //For wen - many papers refer to Transgene. This will allow curators to track which is used for mapping Mapping_data 2_point ?2_point_data Multi_point ?Multi_pt_data Phenotype ?Phenotype XREF Transgene #Phenotype_info // [2006-04-20 ar2] changed for Carols Phenotype changes Phenotype_not_observed ?Phenotype XREF Not_in_Transgene #Phenotype_info //added by Wen to separate Not phenotype from real phenotypes Used_for Rescue ?Gene XREF Rescued_by_Transgene ?Variation XREF Rescued_by_Transgene //if the transgene rescue a mutant Expr_pattern ?Expr_pattern XREF Transgene //If the transgene is used for Expr_pattern Marker_for ?Text #Evidence //if the transgene is used as a tissue specific marker. Gene_regulation ?Gene_regulation XREF Transgene //if the transgenes is used for gene regulation assy Interactor ?Interaction //If the transgene is involved in interaction Associated_with Marked_rearrangement ?Rearrangement XREF By_transgene Clone ?Clone XREF Transgene Text //injected clone conc. Strain ?Strain XREF Transgene //All strains with the transgene. **can make sure to only dump strains in CGC or dump all- have webteam highlight CGC ones** Reference ?Paper XREF Transgene // papers referring to transgene. Species UNIQUE ?Species // added by krb for consistency with other classes 021030 Remark ?Text #Evidence // More comments on the transgene
Current Model 03 March 2011
/////////////////////////////////////////////////////////////////////////////// //Transgene class from Wen Chen 12/00 /////////////////////////////////////////////////////////////////////////////// ?Transgene Summary UNIQUE ?Text //Searchable description of the transgene Synonym ?Text //for alternative names Driven_by Driven_by_gene ?Gene XREF Drives_transgene Driven_by_construct ?Text //for artificial promoters Reporter_product GFP //The following tags describe the reporter products YFP CFP Venus DsRed mCherry RFP LacZ Other_reporter ?Text Gene ?Gene XREF Transgene_product Text //reporter gene Isolation Author ?Author //Authors who created the transgene Clone ?Clone XREF Transgene Text //injected clone conc. Fragment Text Text //injected DNA fragment conc. Injected_into_CGC_strain ?Strain Injected_into Text // for strains not available in CGC Integrated_by UNIQUE Gamma_ray //this is the integration method X_ray Spontaneous UV Particle_bombardment Not_integrated Other_integration_method Text Location ?Laboratory #Lab_Location //Which Labs have the transgene. Strain ?Strain XREF Transgene //All strains in CGC with the transgene. Map ?Map #Map_position //map position Map_evidence #Evidence //For wen - many papers refer to Transgene. This will allow curators to track which is used for mapping Mapping_data 2_point ?2_point_data Multi_point ?Multi_pt_data Phenotype ?Phenotype XREF Transgene #Phenotype_info // [2006-04-20 ar2] changed for Carols Phenotype changes Phenotype_not_observed ?Phenotype XREF Not_in_Transgene #Phenotype_info //added by Wen to separate Not phenotype from real phenotypes Rescue ?Gene XREF Rescued_by_Transgene ?Variation XREF Rescued_by_Transgene //if the transgene rescue a mutant Expr_pattern ?Expr_pattern XREF Transgene //If the transgene is used for Expr_pattern Marker_for ?Text #Evidence //if the transgene is used as a tissue specific marker. Marked_rearrangement ?Rearrangement XREF By_transgene Gene_regulation ?Gene_regulation XREF Transgene //if the transgenes is used for gene regulation assy Interactor ?Interaction //If the transgene is involved in interaction Reference ?Paper XREF Transgene // papers refered to the transgene. Species UNIQUE ?Species // added by krb for consistency with other classes 021030 Remark ?Text #Evidence // More comments on the transgene Supporting_data Movie ?Movie XREF Transgene #Evidence Picture ?Picture XREF Transgene #Evidence
Proposed Changes
Unused tags
2_point
Rescue
Supporting_data
Movie
Picture