Difference between revisions of "WormBase Model:Transgene"
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Driven_by Driven_by_gene ?Gene XREF Drives_transgene | Driven_by Driven_by_gene ?Gene XREF Drives_transgene | ||
Driven_by_construct ?Text //for artificial promoters | Driven_by_construct ?Text //for artificial promoters | ||
− | Reporter_product GFP | + | Reporter_product GFP //The following tags describe the reporter products |
− | YFP | + | YFP |
− | CFP | + | CFP |
− | Venus | + | Venus |
− | DsRed | + | DsRed |
− | mCherry | + | mCherry |
− | RFP | + | RFP |
LacZ | LacZ | ||
Other_reporter ?Text | Other_reporter ?Text | ||
− | Gene ?Gene XREF Transgene_product Text | + | Gene ?Gene XREF Transgene_product Text //reporter gene |
− | Isolation Author ?Author | + | Isolation Author ?Author //Authors who created the transgene |
Clone ?Clone XREF Transgene Text //injected clone conc. | Clone ?Clone XREF Transgene Text //injected clone conc. | ||
Fragment Text Text //injected DNA fragment conc. | Fragment Text Text //injected DNA fragment conc. | ||
− | Injected_into_CGC_strain ?Strain | + | Injected_into_CGC_strain ?Strain |
Injected_into Text // for strains not available in CGC | Injected_into Text // for strains not available in CGC | ||
− | Integrated_by UNIQUE Gamma_ray | + | Integrated_by UNIQUE Gamma_ray //this is the integration method |
X_ray | X_ray | ||
Spontaneous | Spontaneous | ||
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Location ?Laboratory #Lab_Location //Which Labs have the transgene. | Location ?Laboratory #Lab_Location //Which Labs have the transgene. | ||
Strain ?Strain XREF Transgene //All strains in CGC with the transgene. | Strain ?Strain XREF Transgene //All strains in CGC with the transgene. | ||
− | Map ?Map #Map_position | + | Map ?Map #Map_position //map position |
− | Map_evidence #Evidence //For wen - many papers refer to Transgene. This will allow curators to track which is used | + | Map_evidence #Evidence //For wen - many papers refer to Transgene. This will allow curators to track which is used for mapping |
Mapping_data 2_point ?2_point_data | Mapping_data 2_point ?2_point_data | ||
Multi_point ?Multi_pt_data | Multi_point ?Multi_pt_data | ||
Phenotype ?Phenotype XREF Transgene #Phenotype_info // [2006-04-20 ar2] changed for Carols Phenotype changes | Phenotype ?Phenotype XREF Transgene #Phenotype_info // [2006-04-20 ar2] changed for Carols Phenotype changes | ||
Phenotype_not_observed ?Phenotype XREF Not_in_Transgene #Phenotype_info //added by Wen to separate Not phenotype from real phenotypes | Phenotype_not_observed ?Phenotype XREF Not_in_Transgene #Phenotype_info //added by Wen to separate Not phenotype from real phenotypes | ||
− | Rescue ?Gene XREF Rescued_by_Transgene ?Variation XREF Rescued_by_Transgene | + | Rescue ?Gene XREF Rescued_by_Transgene ?Variation XREF Rescued_by_Transgene //if the transgene rescue a mutant |
− | Expr_pattern ?Expr_pattern XREF Transgene // | + | Expr_pattern ?Expr_pattern XREF Transgene //If the transgene is used for Expr_pattern |
− | Marker_for ?Text #Evidence // | + | Marker_for ?Text #Evidence //if the transgene is used as a tissue specific marker. |
Marked_rearrangement ?Rearrangement XREF By_transgene | Marked_rearrangement ?Rearrangement XREF By_transgene | ||
− | Gene_regulation ?Gene_regulation XREF Transgene | + | Gene_regulation ?Gene_regulation XREF Transgene //if the transgenes is used for gene regulation assy |
− | Interactor ?Interaction | + | Interactor ?Interaction //If the transgene is involved in interaction |
Reference ?Paper XREF Transgene // papers refered to the transgene. | Reference ?Paper XREF Transgene // papers refered to the transgene. | ||
Species UNIQUE ?Species // added by krb for consistency with other classes 021030 | Species UNIQUE ?Species // added by krb for consistency with other classes 021030 |
Revision as of 21:30, 7 December 2010
Curator Comments/Description
Model
/////////////////////////////////////////////////////////////////////////////// //Transgene class from Wen Chen 12/00 /////////////////////////////////////////////////////////////////////////////// ?Transgene Summary UNIQUE ?Text //Searchable description of the transgene Synonym ?Text //for alternative names Driven_by Driven_by_gene ?Gene XREF Drives_transgene Driven_by_construct ?Text //for artificial promoters Reporter_product GFP //The following tags describe the reporter products YFP CFP Venus DsRed mCherry RFP LacZ Other_reporter ?Text Gene ?Gene XREF Transgene_product Text //reporter gene Isolation Author ?Author //Authors who created the transgene Clone ?Clone XREF Transgene Text //injected clone conc. Fragment Text Text //injected DNA fragment conc. Injected_into_CGC_strain ?Strain Injected_into Text // for strains not available in CGC Integrated_by UNIQUE Gamma_ray //this is the integration method X_ray Spontaneous UV Particle_bombardment Not_integrated Other_integration_method Text Location ?Laboratory #Lab_Location //Which Labs have the transgene. Strain ?Strain XREF Transgene //All strains in CGC with the transgene. Map ?Map #Map_position //map position Map_evidence #Evidence //For wen - many papers refer to Transgene. This will allow curators to track which is used for mapping Mapping_data 2_point ?2_point_data Multi_point ?Multi_pt_data Phenotype ?Phenotype XREF Transgene #Phenotype_info // [2006-04-20 ar2] changed for Carols Phenotype changes Phenotype_not_observed ?Phenotype XREF Not_in_Transgene #Phenotype_info //added by Wen to separate Not phenotype from real phenotypes Rescue ?Gene XREF Rescued_by_Transgene ?Variation XREF Rescued_by_Transgene //if the transgene rescue a mutant Expr_pattern ?Expr_pattern XREF Transgene //If the transgene is used for Expr_pattern Marker_for ?Text #Evidence //if the transgene is used as a tissue specific marker. Marked_rearrangement ?Rearrangement XREF By_transgene Gene_regulation ?Gene_regulation XREF Transgene //if the transgenes is used for gene regulation assy Interactor ?Interaction //If the transgene is involved in interaction Reference ?Paper XREF Transgene // papers refered to the transgene. Species UNIQUE ?Species // added by krb for consistency with other classes 021030 Remark ?Text #Evidence // More comments on the transgene Supporting_data Movie ?Movie XREF Transgene #Evidence Picture ?Picture XREF Transgene #Evidence
Proposed Changes
Unused tags
2_point
Rescue
Supporting_data
Movie
Picture