Difference between revisions of "WormBase Model:Transgene"

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(Created page with '__TOC__ WormBase Models == Curator Comments/Description == == Model == <pre> </pre> == Proposed Changes ==')
 
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== Model ==
 
== Model ==
 
<pre>
 
<pre>
 +
///////////////////////////////////////////////////////////////////////////////
 +
//Transgene class from Wen Chen 12/00
 +
///////////////////////////////////////////////////////////////////////////////
 +
 +
?Transgene      Summary UNIQUE ?Text //Searchable description of the transgene
 +
                Synonym ?Text //for alternative names
 +
                Driven_by Driven_by_gene          ?Gene XREF Drives_transgene
 +
                          Driven_by_construct      ?Text //for artificial promoters   
 +
                Reporter_product GFP
 +
                                YFP //Added by Wen
 +
                                CFP //Added by Wen
 +
                                Venus //Added by Wen
 +
                                DsRed //Added by Wen
 +
                                mCherry //Added by Wen
 +
                                RFP //Added by Wen
 +
                                LacZ
 +
                                Other_reporter ?Text
 +
                                Gene ?Gene XREF Transgene_product Text
 +
                Isolation Author ?Author
 +
                          Clone ?Clone XREF Transgene Text //injected clone conc.
 +
                          Fragment Text Text //injected DNA fragment conc.
 +
                          Injected_into_CGC_strain ?Strain
 +
                          Injected_into Text    // for strains not available in CGC
 +
                          Integrated_by UNIQUE Gamma_ray
 +
                                              X_ray
 +
                                              Spontaneous
 +
                                              UV
 +
                                              Particle_bombardment
 +
                                              Not_integrated
 +
                                              Other_integration_method Text
 +
                Location ?Laboratory #Lab_Location //Which Labs have the transgene.
 +
                Strain ?Strain XREF Transgene //All strains in CGC with the transgene.
 +
                Map ?Map  #Map_position
 +
                Map_evidence #Evidence //For wen - many papers refer to Transgene. This will allow curators to track which is used.
 +
                Mapping_data 2_point ?2_point_data
 +
                            Multi_point ?Multi_pt_data
 +
                Phenotype ?Phenotype XREF Transgene #Phenotype_info // [2006-04-20 ar2] changed for Carols Phenotype changes
 +
                Phenotype_not_observed ?Phenotype XREF Not_in_Transgene #Phenotype_info  //added by Wen to separate Not phenotype from real phenotypes
 +
                Rescue ?Gene XREF Rescued_by_Transgene ?Variation XREF Rescued_by_Transgene
 +
                Expr_pattern ?Expr_pattern XREF Transgene                                        // Related Expr_pattern
 +
                Marker_for  ?Text #Evidence //Marker Summary
 +
                Marked_rearrangement ?Rearrangement XREF By_transgene
 +
                Gene_regulation ?Gene_regulation XREF Transgene
 +
                Interactor ?Interaction
 +
                Reference ?Paper XREF Transgene                                                  // papers refered to the transgene.
 +
                Species UNIQUE ?Species                                                          // added by krb for consistency with other classes 021030
 +
                Remark ?Text #Evidence                                                          // More comments on the transgene
 +
                Supporting_data Movie ?Movie XREF Transgene #Evidence
 +
                                Picture ?Picture XREF Transgene #Evidence
  
 
</pre>
 
</pre>
  
 
== Proposed Changes ==
 
== Proposed Changes ==
 +
==Unused tags==
 +
 +
2_point
 +
 +
Rescue
 +
 +
Supporting_data
 +
 +
Movie
 +
 +
Picture

Revision as of 09:50, 5 October 2010

WormBase Models

Curator Comments/Description

Model

///////////////////////////////////////////////////////////////////////////////
//Transgene class from Wen Chen 12/00
/////////////////////////////////////////////////////////////////////////////// 

?Transgene      Summary UNIQUE ?Text //Searchable description of the transgene
                Synonym ?Text //for alternative names 
                Driven_by Driven_by_gene           ?Gene XREF Drives_transgene
                          Driven_by_construct      ?Text //for artificial promoters     
                Reporter_product GFP
                                 YFP //Added by Wen
                                 CFP //Added by Wen
                                 Venus //Added by Wen
                                 DsRed //Added by Wen
                                 mCherry //Added by Wen
                                 RFP //Added by Wen
                                 LacZ
                                 Other_reporter ?Text
                                 Gene ?Gene XREF Transgene_product Text
                Isolation Author ?Author
                          Clone ?Clone XREF Transgene Text //injected clone conc.
                          Fragment Text Text //injected DNA fragment conc. 
                          Injected_into_CGC_strain ?Strain
                          Injected_into Text    // for strains not available in CGC
                          Integrated_by UNIQUE Gamma_ray
                                               X_ray
                                               Spontaneous
                                               UV
                                               Particle_bombardment
                                               Not_integrated
                                               Other_integration_method Text 
                Location ?Laboratory #Lab_Location //Which Labs have the transgene.
                Strain ?Strain XREF Transgene //All strains in CGC with the transgene.
                Map ?Map  #Map_position 
                Map_evidence #Evidence //For wen - many papers refer to Transgene. This will allow curators to track which is used.
                Mapping_data 2_point ?2_point_data 
                             Multi_point ?Multi_pt_data
                Phenotype ?Phenotype XREF Transgene #Phenotype_info // [2006-04-20 ar2] changed for Carols Phenotype changes
                Phenotype_not_observed ?Phenotype XREF Not_in_Transgene #Phenotype_info  //added by Wen to separate Not phenotype from real phenotypes
                Rescue ?Gene XREF Rescued_by_Transgene ?Variation XREF Rescued_by_Transgene
                Expr_pattern ?Expr_pattern XREF Transgene                                        // Related Expr_pattern
                Marker_for   ?Text #Evidence //Marker Summary
                Marked_rearrangement ?Rearrangement XREF By_transgene
                Gene_regulation ?Gene_regulation XREF Transgene
                Interactor ?Interaction
                Reference ?Paper XREF Transgene                                                  // papers refered to the transgene.
                Species UNIQUE ?Species                                                          // added by krb for consistency with other classes 021030
                Remark ?Text #Evidence                                                           // More comments on the transgene
                Supporting_data Movie ?Movie XREF Transgene #Evidence
                                Picture ?Picture XREF Transgene #Evidence

Proposed Changes

Unused tags

2_point

Rescue

Supporting_data

Movie

Picture