Difference between revisions of "WormBase Model:Transgene"
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== Curator Comments/Description == | == Curator Comments/Description == | ||
+ | ==Updated model for WS245== | ||
+ | <pre> | ||
+ | ?Transgene Evidence #Evidence | ||
+ | Public_name UNIQUE ?Text | ||
+ | Summary UNIQUE ?Text | ||
+ | Synonym ?Text | ||
+ | Corresponding_variation UNIQUE ?Variation XREF Corresponding_transgene //put in to unambiguously associate the allele/transgene | ||
+ | Construction Construct ?Construct XREF Transgene_construct | ||
+ | Coinjection ?Construct XREF Transgene_coinjection | ||
+ | Coinjection_other ?Text //for coinjection markers that are not specified as a construct | ||
+ | Integration_method UNIQUE ?Text | ||
+ | Integrated_from ?Transgene XREF Transgene_derivation | ||
+ | Laboratory ?Laboratory #Lab_Location | ||
+ | Author ?Author | ||
+ | Construction_summary ?Text | ||
+ | Genetic_information Extrachromosomal | ||
+ | Integrated | ||
+ | Map ?Map #Map_position //needed for transgenes with no granular mapping, e.g., just mapped to a LG | ||
+ | Mapping_data 2_point ?2_point_data //deleted for WS245, rolled back for WS246 | ||
+ | Map_evidence #Evidence | ||
+ | Phenotype ?Phenotype XREF Transgene #Phenotype_info | ||
+ | Phenotype_not_observed ?Phenotype XREF Not_in_Transgene #Phenotype_info | ||
+ | Used_for Transgene_derivation ?Transgene XREF Integrated_from | ||
+ | Expr_pattern ?Expr_pattern XREF Transgene | ||
+ | Marker_for ?Text #Evidence | ||
+ | Interactor ?Interaction | ||
+ | Associated_with Marked_rearrangement ?Rearrangement XREF By_transgene | ||
+ | Strain ?Strain XREF Transgene | ||
+ | Reference ?Paper XREF Transgene | ||
+ | Species UNIQUE ?Species | ||
+ | Remark ?Text #Evidence | ||
+ | Historical_gene ?Gene #Evidence | ||
− | + | </pre> | |
− | + | ===Pre WS245 model=== | |
− | + | <pre> | |
− | + | ?Transgene Evidence #Evidence | |
− | == Proposed Updated Model 03 March 2011 == | + | Public_name //added for WS234 |
+ | Summary UNIQUE ?Text | ||
+ | Synonym ?Text | ||
+ | Promoter Driven_by_gene ?Gene XREF Drives_Transgene | ||
+ | Driven_by_construct ?Text | ||
+ | Reporter Reporter_product ?Text | ||
+ | Gene ?Gene XREF Transgene_product Text | ||
+ | 3_UTR ?Gene | ||
+ | Reporter_type ?Text | ||
+ | Construction Fragment ?Text | ||
+ | Coinjection_marker ?Text | ||
+ | Integration_method UNIQUE ?Text | ||
+ | Laboratory ?Laboratory #Lab_Location | ||
+ | Author ?Author | ||
+ | Person ?Person | ||
+ | Genetic_information Extrachromosomal | ||
+ | Integrated | ||
+ | Map ?Map #Map_position | ||
+ | Map_evidence #Evidence | ||
+ | Mapping_data 2_point ?2_point_data | ||
+ | Multi_point ?Multi_pt_data | ||
+ | Phenotype ?Phenotype XREF Transgene #Phenotype_info | ||
+ | Phenotype_not_observed ?Phenotype XREF Not_in_Transgene #Phenotype_info | ||
+ | Used_for | ||
+ | Expr_pattern ?Expr_pattern XREF Transgene | ||
+ | Marker_for ?Text #Evidence | ||
+ | Gene_regulation ?Gene_regulation XREF Transgene | ||
+ | Interactor ?Interaction | ||
+ | Associated_with Marked_rearrangement ?Rearrangement XREF By_transgene | ||
+ | Clone ?Clone XREF Transgene Text | ||
+ | Strain ?Strain XREF Transgene | ||
+ | Reference ?Paper XREF Transgene | ||
+ | Species UNIQUE ?Species | ||
+ | Remark ?Text #Evidence | ||
+ | </pre> | ||
+ | --[[User:Kyook|kjy]] 00:16, 26 May 2012 (UTC) | ||
+ | == Proposed Updated Model 03 March 2011== | ||
<pre> | <pre> | ||
/////////////////////////////////////////////////////////////////////////////// | /////////////////////////////////////////////////////////////////////////////// | ||
− | //Proposed Transgene class 03/11 | + | //Proposed Transgene class 03/11 for WS227 |
/////////////////////////////////////////////////////////////////////////////// | /////////////////////////////////////////////////////////////////////////////// | ||
− | ?Transgene Summary UNIQUE ?Text // | + | ?Transgene Summary UNIQUE ?Text //concise genomic description of the transgene |
− | Synonym ?Text //for alternative names | + | Synonym ?Text //for alternative names |
− | + | Promoter Driven_by_gene ?Gene XREF Drives_transgene //eventually change this tag to promoter_gene | |
− | Driven_by_construct | + | Driven_by_construct ?Text //eventually change this tag to promoter_artificial |
− | Reporter_product | + | Reporter Reporter_product ?Text //removed multiple tags for Reporter_product |
− | Gene ?Gene XREF Transgene_product Text | + | Gene ?Gene XREF Transgene_product Text |
− | + | 3_UTR ?Gene | |
− | Construction | + | Reporter_type ?Text // added for Transcriptional fusion or Translational fusion |
− | Fragment Text ?Text // | + | Construction //new tag to collect the following as subtags |
− | + | Fragment Text ?Text //may be deleted later | |
− | + | Coinjection_marker ?Text | |
− | + | Integration_method UNIQUE ?Text //changed from Integrated_by | |
− | Author ?Author // | + | Laboratory ?Laboratory #Lab_Location //changed from Location |
− | Genetic_information | + | Author ?Author // may eventually be deleted |
− | + | Genetic_information //new tag to collect the following as subtags | |
− | + | Extrachromosomal //new subtag | |
− | + | Integrated //new subtag and collects the mapping tags | |
− | Phenotype ?Phenotype XREF Transgene #Phenotype_info | + | Map ?Map #Map_position |
− | Phenotype_not_observed ?Phenotype XREF Not_in_Transgene #Phenotype_info // | + | Map_evidence #Evidence |
− | + | Mapping_data 2_point ?2_point_data //if no data, can be removed | |
− | Expr_pattern ?Expr_pattern XREF Transgene | + | Multi_point ?Multi_pt_data //if no data can be removed |
− | Marker_for ?Text #Evidence | + | Phenotype ?Phenotype XREF Transgene #Phenotype_info |
− | Gene_regulation ?Gene_regulation XREF Transgene | + | Phenotype_not_observed ?Phenotype XREF Not_in_Transgene #Phenotype_info |
− | Interactor ?Interaction // | + | Used_for //new tag to collect the following as subtags |
− | + | Rescue ?Variation XREF Rescued_by_Transgene //removed ?Gene XREF Rescued_by_transgene | |
− | + | Expr_pattern ?Expr_pattern XREF Transgene | |
− | Clone ?Clone XREF Transgene Text | + | Marker_for ?Text #Evidence |
− | Strain ?Strain XREF Transgene | + | Gene_regulation ?Gene_regulation XREF Transgene |
− | Reference ?Paper XREF Transgene | + | Interactor ?Interaction |
− | Species UNIQUE ?Species | + | Associated_with //new tag to collect the following as subtags |
− | Remark ?Text #Evidence | + | Marked_rearrangement ?Rearrangement XREF By_transgene |
+ | Clone ?Clone XREF Transgene Text | ||
+ | Strain ?Strain XREF Transgene | ||
+ | Reference ?Paper XREF Transgene | ||
+ | Species UNIQUE ?Species | ||
+ | Remark ?Text #Evidence //contains a lot of construction notes | ||
</pre> | </pre> | ||
− | == | + | |
+ | == Model 03 March 2011 pre-WS227== | ||
<pre> | <pre> | ||
/////////////////////////////////////////////////////////////////////////////// | /////////////////////////////////////////////////////////////////////////////// | ||
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Strain ?Strain XREF Transgene //All strains in CGC with the transgene. | Strain ?Strain XREF Transgene //All strains in CGC with the transgene. | ||
Map ?Map #Map_position //map position | Map ?Map #Map_position //map position | ||
− | Map_evidence #Evidence //For wen - many papers refer to Transgene | + | Map_evidence #Evidence //For wen - many papers refer to Transgene, this allows curators to track which is used for mapping |
Mapping_data 2_point ?2_point_data | Mapping_data 2_point ?2_point_data | ||
Multi_point ?Multi_pt_data | Multi_point ?Multi_pt_data | ||
Phenotype ?Phenotype XREF Transgene #Phenotype_info // [2006-04-20 ar2] changed for Carols Phenotype changes | Phenotype ?Phenotype XREF Transgene #Phenotype_info // [2006-04-20 ar2] changed for Carols Phenotype changes | ||
− | Phenotype_not_observed ?Phenotype XREF Not_in_Transgene #Phenotype_info //added by Wen | + | Phenotype_not_observed ?Phenotype XREF Not_in_Transgene #Phenotype_info //added by Wen separates Not phenotype from phenotype |
Rescue ?Gene XREF Rescued_by_Transgene ?Variation XREF Rescued_by_Transgene //if the transgene rescue a mutant | Rescue ?Gene XREF Rescued_by_Transgene ?Variation XREF Rescued_by_Transgene //if the transgene rescue a mutant | ||
− | Expr_pattern ?Expr_pattern XREF Transgene | + | Expr_pattern ?Expr_pattern XREF Transgene //If the transgene is used for Expr_pattern |
Marker_for ?Text #Evidence //if the transgene is used as a tissue specific marker. | Marker_for ?Text #Evidence //if the transgene is used as a tissue specific marker. | ||
Marked_rearrangement ?Rearrangement XREF By_transgene | Marked_rearrangement ?Rearrangement XREF By_transgene | ||
Gene_regulation ?Gene_regulation XREF Transgene //if the transgenes is used for gene regulation assy | Gene_regulation ?Gene_regulation XREF Transgene //if the transgenes is used for gene regulation assy | ||
Interactor ?Interaction //If the transgene is involved in interaction | Interactor ?Interaction //If the transgene is involved in interaction | ||
− | Reference ?Paper XREF Transgene | + | Reference ?Paper XREF Transgene // papers refered to the transgene. |
− | Species UNIQUE ?Species | + | Species UNIQUE ?Species // added by krb for consistency with other classes 021030 |
− | Remark ?Text #Evidence | + | Remark ?Text #Evidence // More comments on the transgene |
Supporting_data Movie ?Movie XREF Transgene #Evidence | Supporting_data Movie ?Movie XREF Transgene #Evidence | ||
Picture ?Picture XREF Transgene #Evidence | Picture ?Picture XREF Transgene #Evidence | ||
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== Proposed Changes == | == Proposed Changes == | ||
− | |||
− | + | ==Approved Changes== | |
+ | ===WS251=== | ||
+ | <pre> | ||
+ | Transgene_for_disease ?DO_term XREF Associated_transgene #Evidence | ||
+ | </pre> | ||
+ | ===WS238=== | ||
+ | <pre style="white-space: pre-wrap; | ||
+ | white-space: -moz-pre-wrap; | ||
+ | white-space: -pre-wrap; | ||
+ | white-space: -o-pre-wrap; | ||
+ | word-wrap: break-word;"> | ||
+ | Historical gene tags added by Chris | ||
+ | Promoter Driven_by_gene ?Gene XREF Drives_transgene // eventually change this tag to promoter_gene | ||
+ | Promoter Driven_by_gene ?Gene XREF Drives_transgene #Evidence // eventually change this tag to promoter_gene | ||
+ | Gene ?Gene XREF Transgene_product Text | ||
+ | Gene ?Gene XREF Transgene_product #Evidence | ||
+ | 3_UTR ?Gene | ||
+ | 3_UTR ?Gene #Evidence | ||
+ | </pre> | ||
+ | ===WS237=== | ||
+ | <pre style="white-space: pre-wrap; | ||
+ | white-space: -moz-pre-wrap; | ||
+ | white-space: -pre-wrap; | ||
+ | white-space: -o-pre-wrap; | ||
+ | word-wrap: break-word;"> | ||
+ | Construction_summary Text //To keep in sync with website tags - moved all Remark info to Construction Summary. Remark comments are by default hidden in the overview widget | ||
+ | </pre> | ||
+ | ===WS234=== | ||
+ | <pre style="white-space: pre-wrap; | ||
+ | white-space: -moz-pre-wrap; | ||
+ | white-space: -pre-wrap; | ||
+ | white-space: -o-pre-wrap; | ||
+ | word-wrap: break-word;"> | ||
+ | Public_name //Added to implement WBTransgeneID as main object name. Necessary for resolving duplications/ambiguities resulting from cross curation with expression pattern and gene regulation. | ||
+ | </pre> | ||
+ | ===WS233=== | ||
+ | Reporter 3_UTR ?Gene //Added by Chris | ||
+ | ===WS227=== | ||
+ | <pre style="white-space: pre-wrap; | ||
+ | white-space: -moz-pre-wrap; | ||
+ | white-space: -pre-wrap; | ||
+ | white-space: -o-pre-wrap; | ||
+ | word-wrap: break-word;"> | ||
+ | *Summary //now only contains concise genomic description of the transgene in brackets | ||
+ | *Rescue XREF ?Variation// no XREF to ?Gene | ||
+ | Remove tags: | ||
+ | *Supporting_data //removed along with subtags | ||
+ | *Isolation | ||
+ | *Gamma_ray | ||
+ | *X_ray | ||
+ | *Spontaneous | ||
+ | *UV | ||
+ | *Particle_bombardment | ||
+ | *Not_integrated | ||
+ | *Other_integration_method | ||
+ | *GFP | ||
+ | *YFP | ||
+ | *CFP | ||
+ | *Venus | ||
+ | *DsRed | ||
+ | *mCherry | ||
+ | *RFP | ||
+ | *LacZ | ||
+ | *Other_reporter | ||
− | Rescue | + | New tags: |
+ | *Promoter -> new tag for subtags Driven_by_gene and Driven_by_construct | ||
+ | *Reporter -> new tag to group Reporter_product and Gene | ||
+ | *Reporter_type -> new tag for Transcriptional fusion, Translational fusion | ||
+ | *Construction -> new tag to group subtags Fragment, Coinjection_marker, Integration_method | ||
+ | *Genetic_information -> new tag to group new subtags Extrachromosomal and Integrated | ||
+ | *Extrachromosomal -> new subtag | ||
+ | *Integrated -> new subtag and groups the mapping tags Map, Map_evidence, Mapping_data, 2_point, Multi_point | ||
+ | *Used_for -> new tag to group Rescue, Expr_pattern, Marker_for, Gene_regulation, Interactor, | ||
+ | *Associated_with -> new tag to group subtags Marked_rearrangement, Clone, Strain | ||
− | + | Tag name changes | |
+ | *Integration_method -> changed from Integrated_by | ||
+ | *Laboratory -> changed from Location | ||
+ | |||
+ | For Map class | ||
+ | ?Map | ||
+ | Transgene ?Transgene XREF Map | ||
+ | Transgene ?Transgene //sdm added to display gmaps //removed XREF ky 2011 | ||
+ | -D XREF Map | ||
+ | </pre> | ||
− | Movie | + | ==Unused tags== |
− | + | 2_point -> if nothing in it, remove it\\ | |
− | Picture | + | Rescue -> changed use of tag, will be used\\ |
+ | Supporting_data -> remove\\ | ||
+ | Movie -> remove\\ | ||
+ | Picture -> remove\\ |
Latest revision as of 20:12, 22 September 2015
Contents
Curator Comments/Description
Updated model for WS245
?Transgene Evidence #Evidence Public_name UNIQUE ?Text Summary UNIQUE ?Text Synonym ?Text Corresponding_variation UNIQUE ?Variation XREF Corresponding_transgene //put in to unambiguously associate the allele/transgene Construction Construct ?Construct XREF Transgene_construct Coinjection ?Construct XREF Transgene_coinjection Coinjection_other ?Text //for coinjection markers that are not specified as a construct Integration_method UNIQUE ?Text Integrated_from ?Transgene XREF Transgene_derivation Laboratory ?Laboratory #Lab_Location Author ?Author Construction_summary ?Text Genetic_information Extrachromosomal Integrated Map ?Map #Map_position //needed for transgenes with no granular mapping, e.g., just mapped to a LG Mapping_data 2_point ?2_point_data //deleted for WS245, rolled back for WS246 Map_evidence #Evidence Phenotype ?Phenotype XREF Transgene #Phenotype_info Phenotype_not_observed ?Phenotype XREF Not_in_Transgene #Phenotype_info Used_for Transgene_derivation ?Transgene XREF Integrated_from Expr_pattern ?Expr_pattern XREF Transgene Marker_for ?Text #Evidence Interactor ?Interaction Associated_with Marked_rearrangement ?Rearrangement XREF By_transgene Strain ?Strain XREF Transgene Reference ?Paper XREF Transgene Species UNIQUE ?Species Remark ?Text #Evidence Historical_gene ?Gene #Evidence
Pre WS245 model
?Transgene Evidence #Evidence Public_name //added for WS234 Summary UNIQUE ?Text Synonym ?Text Promoter Driven_by_gene ?Gene XREF Drives_Transgene Driven_by_construct ?Text Reporter Reporter_product ?Text Gene ?Gene XREF Transgene_product Text 3_UTR ?Gene Reporter_type ?Text Construction Fragment ?Text Coinjection_marker ?Text Integration_method UNIQUE ?Text Laboratory ?Laboratory #Lab_Location Author ?Author Person ?Person Genetic_information Extrachromosomal Integrated Map ?Map #Map_position Map_evidence #Evidence Mapping_data 2_point ?2_point_data Multi_point ?Multi_pt_data Phenotype ?Phenotype XREF Transgene #Phenotype_info Phenotype_not_observed ?Phenotype XREF Not_in_Transgene #Phenotype_info Used_for Expr_pattern ?Expr_pattern XREF Transgene Marker_for ?Text #Evidence Gene_regulation ?Gene_regulation XREF Transgene Interactor ?Interaction Associated_with Marked_rearrangement ?Rearrangement XREF By_transgene Clone ?Clone XREF Transgene Text Strain ?Strain XREF Transgene Reference ?Paper XREF Transgene Species UNIQUE ?Species Remark ?Text #Evidence
--kjy 00:16, 26 May 2012 (UTC)
Proposed Updated Model 03 March 2011
/////////////////////////////////////////////////////////////////////////////// //Proposed Transgene class 03/11 for WS227 /////////////////////////////////////////////////////////////////////////////// ?Transgene Summary UNIQUE ?Text //concise genomic description of the transgene Synonym ?Text //for alternative names Promoter Driven_by_gene ?Gene XREF Drives_transgene //eventually change this tag to promoter_gene Driven_by_construct ?Text //eventually change this tag to promoter_artificial Reporter Reporter_product ?Text //removed multiple tags for Reporter_product Gene ?Gene XREF Transgene_product Text 3_UTR ?Gene Reporter_type ?Text // added for Transcriptional fusion or Translational fusion Construction //new tag to collect the following as subtags Fragment Text ?Text //may be deleted later Coinjection_marker ?Text Integration_method UNIQUE ?Text //changed from Integrated_by Laboratory ?Laboratory #Lab_Location //changed from Location Author ?Author // may eventually be deleted Genetic_information //new tag to collect the following as subtags Extrachromosomal //new subtag Integrated //new subtag and collects the mapping tags Map ?Map #Map_position Map_evidence #Evidence Mapping_data 2_point ?2_point_data //if no data, can be removed Multi_point ?Multi_pt_data //if no data can be removed Phenotype ?Phenotype XREF Transgene #Phenotype_info Phenotype_not_observed ?Phenotype XREF Not_in_Transgene #Phenotype_info Used_for //new tag to collect the following as subtags Rescue ?Variation XREF Rescued_by_Transgene //removed ?Gene XREF Rescued_by_transgene Expr_pattern ?Expr_pattern XREF Transgene Marker_for ?Text #Evidence Gene_regulation ?Gene_regulation XREF Transgene Interactor ?Interaction Associated_with //new tag to collect the following as subtags Marked_rearrangement ?Rearrangement XREF By_transgene Clone ?Clone XREF Transgene Text Strain ?Strain XREF Transgene Reference ?Paper XREF Transgene Species UNIQUE ?Species Remark ?Text #Evidence //contains a lot of construction notes
Model 03 March 2011 pre-WS227
/////////////////////////////////////////////////////////////////////////////// //Transgene class from Wen Chen 12/00 /////////////////////////////////////////////////////////////////////////////// ?Transgene Summary UNIQUE ?Text //Searchable description of the transgene Synonym ?Text //for alternative names Driven_by Driven_by_gene ?Gene XREF Drives_transgene Driven_by_construct ?Text //for artificial promoters Reporter_product GFP //The following tags describe the reporter products YFP CFP Venus DsRed mCherry RFP LacZ Other_reporter ?Text Gene ?Gene XREF Transgene_product Text //reporter gene Isolation Author ?Author //Authors who created the transgene Clone ?Clone XREF Transgene Text //injected clone conc. Fragment Text Text //injected DNA fragment conc. Injected_into_CGC_strain ?Strain Injected_into Text // for strains not available in CGC Integrated_by UNIQUE Gamma_ray //this is the integration method X_ray Spontaneous UV Particle_bombardment Not_integrated Other_integration_method Text Location ?Laboratory #Lab_Location //Which Labs have the transgene. Strain ?Strain XREF Transgene //All strains in CGC with the transgene. Map ?Map #Map_position //map position Map_evidence #Evidence //For wen - many papers refer to Transgene, this allows curators to track which is used for mapping Mapping_data 2_point ?2_point_data Multi_point ?Multi_pt_data Phenotype ?Phenotype XREF Transgene #Phenotype_info // [2006-04-20 ar2] changed for Carols Phenotype changes Phenotype_not_observed ?Phenotype XREF Not_in_Transgene #Phenotype_info //added by Wen separates Not phenotype from phenotype Rescue ?Gene XREF Rescued_by_Transgene ?Variation XREF Rescued_by_Transgene //if the transgene rescue a mutant Expr_pattern ?Expr_pattern XREF Transgene //If the transgene is used for Expr_pattern Marker_for ?Text #Evidence //if the transgene is used as a tissue specific marker. Marked_rearrangement ?Rearrangement XREF By_transgene Gene_regulation ?Gene_regulation XREF Transgene //if the transgenes is used for gene regulation assy Interactor ?Interaction //If the transgene is involved in interaction Reference ?Paper XREF Transgene // papers refered to the transgene. Species UNIQUE ?Species // added by krb for consistency with other classes 021030 Remark ?Text #Evidence // More comments on the transgene Supporting_data Movie ?Movie XREF Transgene #Evidence Picture ?Picture XREF Transgene #Evidence
Proposed Changes
Approved Changes
WS251
Transgene_for_disease ?DO_term XREF Associated_transgene #Evidence
WS238
Historical gene tags added by Chris Promoter Driven_by_gene ?Gene XREF Drives_transgene // eventually change this tag to promoter_gene Promoter Driven_by_gene ?Gene XREF Drives_transgene #Evidence // eventually change this tag to promoter_gene Gene ?Gene XREF Transgene_product Text Gene ?Gene XREF Transgene_product #Evidence 3_UTR ?Gene 3_UTR ?Gene #Evidence
WS237
Construction_summary Text //To keep in sync with website tags - moved all Remark info to Construction Summary. Remark comments are by default hidden in the overview widget
WS234
Public_name //Added to implement WBTransgeneID as main object name. Necessary for resolving duplications/ambiguities resulting from cross curation with expression pattern and gene regulation.
WS233
Reporter 3_UTR ?Gene //Added by Chris
WS227
*Summary //now only contains concise genomic description of the transgene in brackets *Rescue XREF ?Variation// no XREF to ?Gene Remove tags: *Supporting_data //removed along with subtags *Isolation *Gamma_ray *X_ray *Spontaneous *UV *Particle_bombardment *Not_integrated *Other_integration_method *GFP *YFP *CFP *Venus *DsRed *mCherry *RFP *LacZ *Other_reporter New tags: *Promoter -> new tag for subtags Driven_by_gene and Driven_by_construct *Reporter -> new tag to group Reporter_product and Gene *Reporter_type -> new tag for Transcriptional fusion, Translational fusion *Construction -> new tag to group subtags Fragment, Coinjection_marker, Integration_method *Genetic_information -> new tag to group new subtags Extrachromosomal and Integrated *Extrachromosomal -> new subtag *Integrated -> new subtag and groups the mapping tags Map, Map_evidence, Mapping_data, 2_point, Multi_point *Used_for -> new tag to group Rescue, Expr_pattern, Marker_for, Gene_regulation, Interactor, *Associated_with -> new tag to group subtags Marked_rearrangement, Clone, Strain Tag name changes *Integration_method -> changed from Integrated_by *Laboratory -> changed from Location For Map class ?Map Transgene ?Transgene XREF Map Transgene ?Transgene //sdm added to display gmaps //removed XREF ky 2011 -D XREF Map
Unused tags
2_point -> if nothing in it, remove it\\ Rescue -> changed use of tag, will be used\\ Supporting_data -> remove\\ Movie -> remove\\ Picture -> remove\\