Difference between revisions of "WormBase Model:Structure data"

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(Created page with '__TOC__ WormBase Models == Curator Comments/Description == == Model == <pre> </pre> == Proposed Changes ==')
 
 
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== Model ==
 
== Model ==
 
<pre>
 
<pre>
 +
///////////////////////////////////
 +
// Structure_data model for Payan
 +
///////////////////////////////////
 +
 +
?Structure_data Evidence            #Evidence //Contains Date_last_updated                                   
 +
                DB_info            Database ?Database ?Database_field ?Accession_number XREF Structure_data // Database_field: Native_ID
 +
                                    Sequence            Protein UNIQUE ?Protein  // Protein sequence as included in the source data
 +
                                    Homol              Pep_homol ?Protein XREF Structure_homol ?Method Float Int UNIQUE Int Int UNIQUE Int #Homol_info
 +
                                                        Homol_homol ?Homol_data XREF Structure_homol ?Method Float Int UNIQUE Int Int UNIQUE Int #Homol_info
 +
                Status              Selected UNIQUE DateType
 +
                                    Cloned UNIQUE DateType
 +
                                    Expressed UNIQUE DateType
 +
                                    Soluble UNIQUE DateType
 +
                                    Purified UNIQUE DateType
 +
                                    Crystallized UNIQUE DateType
 +
                                    Diffraction_quality_crystals UNIQUE DateType
 +
                                    Diffraction UNIQUE DateType
 +
                                    Native_diffraction_data UNIQUE DateType
 +
                                    Phasing_diffraction_data UNIQUE DateType
 +
                                    Nmr_assigned UNIQUE DateType
 +
                                    Hsqc UNIQUE DateType
 +
                                    Crystal_structure UNIQUE DateType
 +
                                    Nmr_structure UNIQUE DateType
 +
                                    In_pdb UNIQUE DateType
 +
                                    In_bmrb UNIQUE DateType
 +
                                    Work_stopped UNIQUE DateType
 +
                                    Test_target UNIQUE DateType
 +
                                    Other UNIQUE DateType                                 
 +
                Status_updated      UNIQUE DateType // Date when status was updated as reported by the source data
 +
                Wormpep_release    UNIQUE Int// The Wormpep release that was used for mapping
 +
                Remark              ?Text #Evidence
  
 
</pre>
 
</pre>
  
 
== Proposed Changes ==
 
== Proposed Changes ==
 +
Homol_homol
 +
 +
Test_target
 +
 +
Other
 +
 +
Remark

Latest revision as of 09:45, 5 October 2010

WormBase Models

Curator Comments/Description

Model

///////////////////////////////////
// Structure_data model for Payan
///////////////////////////////////

?Structure_data Evidence            #Evidence //Contains Date_last_updated                                    
                DB_info             Database ?Database ?Database_field ?Accession_number XREF Structure_data // Database_field: Native_ID
                                    Sequence            Protein UNIQUE ?Protein  // Protein sequence as included in the source data
                                    Homol               Pep_homol ?Protein XREF Structure_homol ?Method Float Int UNIQUE Int Int UNIQUE Int #Homol_info 
                                                        Homol_homol ?Homol_data XREF Structure_homol ?Method Float Int UNIQUE Int Int UNIQUE Int #Homol_info 
                Status              Selected UNIQUE DateType
                                    Cloned UNIQUE DateType
                                    Expressed UNIQUE DateType
                                    Soluble UNIQUE DateType
                                    Purified UNIQUE DateType
                                    Crystallized UNIQUE DateType
                                    Diffraction_quality_crystals UNIQUE DateType
                                    Diffraction UNIQUE DateType
                                    Native_diffraction_data UNIQUE DateType
                                    Phasing_diffraction_data UNIQUE DateType
                                    Nmr_assigned UNIQUE DateType
                                    Hsqc UNIQUE DateType
                                    Crystal_structure UNIQUE DateType
                                    Nmr_structure UNIQUE DateType
                                    In_pdb UNIQUE DateType
                                    In_bmrb UNIQUE DateType
                                    Work_stopped UNIQUE DateType
                                    Test_target UNIQUE DateType
                                    Other UNIQUE DateType                                   
                Status_updated      UNIQUE DateType // Date when status was updated as reported by the source data
                Wormpep_release     UNIQUE Int// The Wormpep release that was used for mapping
                Remark              ?Text #Evidence

Proposed Changes

Homol_homol

Test_target

Other

Remark