Difference between revisions of "WormBase Model:SMap info"
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Latest revision as of 09:33, 5 October 2010
Curator Comments/Description
Poss internal class
Model
// SMap stuff #SMap_info Method UNIQUE ?Method // methods used in child (optional) Content Homol_only // useful for -nohomol gff option Feature_only // useful for -nofeature gff option Mapping Align Int UNIQUE Int UNIQUE Int // not needed if full alignment is ungapped // one row per ungapped alignment section // first int is position in parent, second in child // third int is length - only necessary when gaps in both sequences align Mismatch Int // Int give position(s) in parent of mismatches (technically in which they will // not create an error if they occur // if just the tag is set without values, then accept mismatches anywhere Display Max_mag UNIQUE Float // don't show if more bases per line Min_mag UNIQUE Float // don't show if fewer bases per line