Difference between revisions of "WormBase Model:SAGE tag"
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== Model == | == Model == | ||
<pre> | <pre> | ||
+ | ?SAGE_tag Evidence #Evidence | ||
+ | Homol Homol_homol ?Homol_data XREF SAGE_homol ?Method Float Int UNIQUE Int Int UNIQUE Int #Homol_info | ||
+ | Tag_sequence UNIQUE Text //tag sequence including the restriction site | ||
+ | Anchoring_enzyme UNIQUE ?Motif //NlaIII most commonly | ||
+ | Tag_length UNIQUE Int //14 most commonly | ||
+ | Most_three_prime // added for tags which are the most 3' in a transcript | ||
+ | Unambiguously_mapped //boolean; describes whether tag is unambiguously mapped to one SAGE transcript or to splice isoforms of the same gene at the same genomic location | ||
+ | Corresponds_to Predicted_CDS ?CDS XREF SAGE_tag #SAGE_mapping_info | ||
+ | Gene ?Gene XREF SAGE_tag #SAGE_mapping_info | ||
+ | Transcript ?Transcript XREF SAGE_tag #SAGE_mapping_info | ||
+ | Pseudogene ?Pseudogene XREF SAGE_tag #SAGE_mapping_info | ||
+ | Results ?SAGE_experiment UNIQUE #SAGE_data //contains SAGE data for all experiments using the tag | ||
+ | Remark ?Text #Evidence | ||
+ | Method UNIQUE ?Method //for GFF dumping | ||
</pre> | </pre> | ||
== Proposed Changes == | == Proposed Changes == | ||
+ | Evidence | ||
+ | Remark | ||
+ | Predicted_CDS |
Latest revision as of 09:16, 5 October 2010
Curator Comments/Description
Model
?SAGE_tag Evidence #Evidence Homol Homol_homol ?Homol_data XREF SAGE_homol ?Method Float Int UNIQUE Int Int UNIQUE Int #Homol_info Tag_sequence UNIQUE Text //tag sequence including the restriction site Anchoring_enzyme UNIQUE ?Motif //NlaIII most commonly Tag_length UNIQUE Int //14 most commonly Most_three_prime // added for tags which are the most 3' in a transcript Unambiguously_mapped //boolean; describes whether tag is unambiguously mapped to one SAGE transcript or to splice isoforms of the same gene at the same genomic location Corresponds_to Predicted_CDS ?CDS XREF SAGE_tag #SAGE_mapping_info Gene ?Gene XREF SAGE_tag #SAGE_mapping_info Transcript ?Transcript XREF SAGE_tag #SAGE_mapping_info Pseudogene ?Pseudogene XREF SAGE_tag #SAGE_mapping_info Results ?SAGE_experiment UNIQUE #SAGE_data //contains SAGE data for all experiments using the tag Remark ?Text #Evidence Method UNIQUE ?Method //for GFF dumping
Proposed Changes
Evidence Remark Predicted_CDS