Difference between revisions of "WormBase Model:Rearrangement"
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== Model == | == Model == | ||
<pre> | <pre> | ||
| + | //////////////////////////////////////////////////////////////////////////////// | ||
| + | // | ||
| + | // ?Rearrangement class | ||
| + | // | ||
| + | //////////////////////////////////////////////////////////////////////////////// | ||
| + | |||
| + | ?Rearrangement Evidence #Evidence | ||
| + | Name Other_name ?Text | ||
| + | Variation ?Variation XREF Rearrangement | ||
| + | Type Deletion | ||
| + | Duplication Free_dup | ||
| + | Translocation | ||
| + | Compound Text | ||
| + | Phenotype ?Phenotype XREF Rearrangement #Phenotype_info | ||
| + | Phenotype_not_observed ?Phenotype XREF Not_in_Rearrangement #Phenotype_info //added by Wen to separate Not phenotype from real phenotypes | ||
| + | Balances ?Map #Balancer | ||
| + | Marked By_variation ?Variation XREF Marked_rearrangement | ||
| + | By_transgene ?Transgene XREF Marked_rearrangement | ||
| + | By_other ?Text | ||
| + | // possibility to refer to other Intervals to describe a complex rearrangement | ||
| + | // for the worm this is not too necessary, but important for fly and mouse | ||
| + | // or perhaps there should be another class Complex_Rear that refers to | ||
| + | // several intervals. | ||
| + | Reference_strain ?Strain | ||
| + | Species UNIQUE ?Species | ||
| + | Remark ?Text #Evidence | ||
| + | Isolation Author ?Author // use Person where possible, else use Author | ||
| + | Person ?Person | ||
| + | Date DateType | ||
| + | Mutagen UNIQUE Text UNIQUE Text // Text is dose | ||
| + | Source_rearrangement ?Rearrangement XREF Derived_rearrangement | ||
| + | Derived_rearrangement ?Rearrangement XREF Source_rearrangement | ||
| + | Map ?Map XREF Rearrangement #Map_position | ||
| + | Positive Gene_inside ?Gene XREF Inside_rearr #Evidence | ||
| + | Locus_inside ?Locus XREF Inside_rearr ?Author | ||
| + | Clone_inside ?Clone XREF Inside_rearr ?Author | ||
| + | Rearr_inside ?Rearrangement | ||
| + | Negative Gene_outside ?Gene XREF Outside_rearr #Evidence | ||
| + | Locus_outside ?Locus XREF Outside_rearr ?Author | ||
| + | Clone_outside ?Clone XREF Outside_rearr ?Author | ||
| + | Rearr_outside ?Rearrangement | ||
| + | Mapping_data Pos_neg_data ?Pos_neg_data | ||
| + | 2_point ?2_point_data | ||
| + | Multi_point ?Multi_pt_data | ||
| + | Display Hide_under UNIQUE ?Rearrangement XREF Hides | ||
| + | Hides ?Rearrangement // no XREF on purpose | ||
| + | Location ?Laboratory #Lab_Location | ||
| + | URL Text | ||
| + | Strain ?Strain XREF Rearrangement | ||
| + | Reference ?Paper XREF Rearrangement | ||
</pre> | </pre> | ||
== Proposed Changes == | == Proposed Changes == | ||
| + | |||
| + | ==Unused tags== | ||
| + | Phenotype | ||
| + | |||
| + | By_other | ||
| + | |||
| + | Species | ||
| + | |||
| + | URL | ||
Latest revision as of 08:51, 5 October 2010
Curator Comments/Description
Model
////////////////////////////////////////////////////////////////////////////////
//
// ?Rearrangement class
//
////////////////////////////////////////////////////////////////////////////////
?Rearrangement Evidence #Evidence
Name Other_name ?Text
Variation ?Variation XREF Rearrangement
Type Deletion
Duplication Free_dup
Translocation
Compound Text
Phenotype ?Phenotype XREF Rearrangement #Phenotype_info
Phenotype_not_observed ?Phenotype XREF Not_in_Rearrangement #Phenotype_info //added by Wen to separate Not phenotype from real phenotypes
Balances ?Map #Balancer
Marked By_variation ?Variation XREF Marked_rearrangement
By_transgene ?Transgene XREF Marked_rearrangement
By_other ?Text
// possibility to refer to other Intervals to describe a complex rearrangement
// for the worm this is not too necessary, but important for fly and mouse
// or perhaps there should be another class Complex_Rear that refers to
// several intervals.
Reference_strain ?Strain
Species UNIQUE ?Species
Remark ?Text #Evidence
Isolation Author ?Author // use Person where possible, else use Author
Person ?Person
Date DateType
Mutagen UNIQUE Text UNIQUE Text // Text is dose
Source_rearrangement ?Rearrangement XREF Derived_rearrangement
Derived_rearrangement ?Rearrangement XREF Source_rearrangement
Map ?Map XREF Rearrangement #Map_position
Positive Gene_inside ?Gene XREF Inside_rearr #Evidence
Locus_inside ?Locus XREF Inside_rearr ?Author
Clone_inside ?Clone XREF Inside_rearr ?Author
Rearr_inside ?Rearrangement
Negative Gene_outside ?Gene XREF Outside_rearr #Evidence
Locus_outside ?Locus XREF Outside_rearr ?Author
Clone_outside ?Clone XREF Outside_rearr ?Author
Rearr_outside ?Rearrangement
Mapping_data Pos_neg_data ?Pos_neg_data
2_point ?2_point_data
Multi_point ?Multi_pt_data
Display Hide_under UNIQUE ?Rearrangement XREF Hides
Hides ?Rearrangement // no XREF on purpose
Location ?Laboratory #Lab_Location
URL Text
Strain ?Strain XREF Rearrangement
Reference ?Paper XREF Rearrangement
Proposed Changes
Unused tags
Phenotype
By_other
Species
URL
