WormBase Model:RNAi

?RNAi Evidence #Evidence

       History_name UNIQUE ?Text
       Homol Homol_homol ?Homol_data XREF RNAi_homol ?Method Float Int UNIQUE Int Int UNIQUE Int #Homol_info
       Sequence_info   DNA_text Text UNIQUE Text //stores actual probe sequence for automated mapping

// 1st Text is DNA, 2nd is probe name

                       Sequence ?Sequence XREF RNAi  //links to a real Sequence object used in the experiment 

// such as yk clone; not UNIQUE anymore

                       PCR_product ?PCR_product XREF RNAi // links to a PCR_product object used in 

// the experiment; not UNIQUE anymore

       Uniquely_mapped  //boolean; if present, signifies that ?RNAi object has a unique sequence 

// which maps to a single place in the genome

       Experiment      Laboratory ?Laboratory
                       Author ?Author
                       Date UNIQUE DateType
                       Strain UNIQUE ?Strain
                       Genotype UNIQUE ?Text   //used when no Strain object exists
                       Treatment UNIQUE ?Text
                       Life_stage UNIQUE ?Life_stage
                       Temperature UNIQUE Int
                       Delivered_by UNIQUE Bacterial_feeding      //RL [010327]
                                           Injection              //RL [010327]
                                           Soaking                //RL [010327]
                                           Transgene_expression   //RL [010327]
       Inhibits        Predicted_gene ?CDS XREF RNAi_result #Evidence // "gene" parent (unreliable)
                       Gene ?Gene   XREF RNAi_result #Evidence           //RL [010327]
                       Transcript ?Transcript XREF RNAi_result #Evidence // [021126 krb]
                       Pseudogene ?Pseudogene XREF RNAi_result #Evidence // [030801 krb]
       Supporting_data Movie ?Movie XREF RNAi    // Lincoln, krb [010807]
                       Picture ?Picture XREF RNAi

DB_info Database ?Database ?Database_field ?Accession_number //to link out to Phenobank ar2 02-DEC-05 //removed UNIQUE as reqs multiple connections Species UNIQUE ?Species Gene_regulation ?Gene_regulation XREF RNAi // this tag is used when an RNAi experiment describes gene regulation ar2 29-MAR-06 for igor Interaction ?Interaction

       Reference UNIQUE ?Paper XREF RNAi //[070215 ar2] made reference unique so Paper sort of equates to a Study class for Will S
       Phenotype ?Phenotype XREF RNAi #Phenotype_info
       Expr_profile ?Expr_profile XREF RNAi_result // connection added during build [030106 krb]
       Remark ?Text #Evidence

Method UNIQUE ?Method