Difference between revisions of "WormBase Model:RNAi"

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(Created page with '?RNAi Evidence #Evidence History_name UNIQUE ?Text Homol Homol_homol ?Homol_data XREF RNAi_homol ?Method Float Int UNIQUE Int Int UNIQUE Int #Homol_info …')
 
(Blanked the page)
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?RNAi  Evidence #Evidence
+
 
        History_name UNIQUE ?Text
 
        Homol Homol_homol ?Homol_data XREF RNAi_homol ?Method Float Int UNIQUE Int Int UNIQUE Int #Homol_info
 
        Sequence_info  DNA_text Text UNIQUE Text //stores actual probe sequence for automated mapping
 
  // 1st Text is DNA, 2nd is probe name
 
                        Sequence ?Sequence XREF RNAi  //links to a real Sequence object used in the experiment
 
      // such as yk clone; not UNIQUE anymore
 
                        PCR_product ?PCR_product XREF RNAi // links to a PCR_product object used in
 
  // the experiment; not UNIQUE anymore
 
        Uniquely_mapped  //boolean; if present, signifies that ?RNAi object has a unique sequence
 
// which maps to a single place in the genome
 
        Experiment      Laboratory ?Laboratory
 
                        Author ?Author
 
                        Date UNIQUE DateType
 
                        Strain UNIQUE ?Strain
 
                        Genotype UNIQUE ?Text  //used when no Strain object exists
 
                        Treatment UNIQUE ?Text
 
                        Life_stage UNIQUE ?Life_stage
 
                        Temperature UNIQUE Int
 
                        Delivered_by UNIQUE Bacterial_feeding      //RL [010327]
 
                                            Injection              //RL [010327]
 
                                            Soaking                //RL [010327]
 
                                            Transgene_expression  //RL [010327]
 
        Inhibits        Predicted_gene ?CDS XREF RNAi_result #Evidence // "gene" parent (unreliable)
 
                        Gene ?Gene  XREF RNAi_result #Evidence          //RL [010327]
 
                        Transcript ?Transcript XREF RNAi_result #Evidence // [021126 krb]
 
                        Pseudogene ?Pseudogene XREF RNAi_result #Evidence // [030801 krb]
 
        Supporting_data Movie ?Movie XREF RNAi    // Lincoln, krb [010807]
 
                        Picture ?Picture XREF RNAi
 
DB_info    Database ?Database ?Database_field ?Accession_number //to link out to Phenobank ar2 02-DEC-05 //removed UNIQUE as reqs multiple connections
 
Species UNIQUE ?Species
 
Gene_regulation ?Gene_regulation XREF RNAi  // this tag is used when an RNAi experiment describes gene regulation ar2 29-MAR-06 for igor
 
Interaction ?Interaction
 
        Reference UNIQUE ?Paper XREF RNAi //[070215 ar2] made reference unique so Paper sort of equates to a Study class for Will S
 
        Phenotype ?Phenotype XREF RNAi #Phenotype_info
 
        Expr_profile ?Expr_profile XREF RNAi_result // connection added during build [030106 krb]
 
        Remark ?Text #Evidence
 
Method UNIQUE ?Method
 

Revision as of 18:02, 6 July 2010