Difference between revisions of "WormBase Model:Pseudogene"
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== Model == | == Model == | ||
<pre> | <pre> | ||
+ | ?Pseudogene Evidence #Evidence | ||
+ | SMap S_parent UNIQUE Sequence UNIQUE ?Sequence XREF Pseudogene | ||
+ | Transposon UNIQUE ?Transposon XREF Pseudogene_child | ||
+ | Structure Source_exons Int UNIQUE Int | ||
+ | DB_info DB_remark ?Text #Evidence | ||
+ | Database ?Database ?Database_field UNIQUE ?Accession_number XREF Pseudogene | ||
+ | Origin From_laboratory UNIQUE ?Laboratory | ||
+ | Species UNIQUE ?Species | ||
+ | Type UNIQUE Coding_pseudogene #Evidence | ||
+ | RNA_pseudogene #Evidence | ||
+ | Transposon_pseudogene #Evidence | ||
+ | Attributes Transcribed #Evidence | ||
+ | Fragment #Evidence | ||
+ | Properties Isoform #Evidence | ||
+ | Visible Gene UNIQUE ?Gene XREF Corresponding_pseudogene // when Pseudogene is live | ||
+ | Gene_history UNIQUE ?Gene XREF Corresponding_pseudogene_history // when Pseudogene is dead | ||
+ | Matching_cDNA ?Sequence XREF Matching_pseudogene #Evidence | ||
+ | Brief_identification UNIQUE ?Text #Evidence | ||
+ | Corresponding_PCR_product ?PCR_product XREF Overlaps_pseudogene | ||
+ | Corresponding_oligo_set ?Oligo_set XREF Overlaps_pseudogene | ||
+ | RNAi_result ?RNAi XREF Pseudogene | ||
+ | Variation ?Variation XREF Pseudogene // for completeness of variation connecting to all gene types | ||
+ | Expr_pattern ?Expr_pattern XREF Pseudogene | ||
+ | Provisional_description ?Text #Evidence | ||
+ | Detailed_description ?Text #Evidence | ||
+ | Concise_description ?Text #Evidence | ||
+ | GO_term ?GO_term XREF Pseudogene ?GO_code #Evidence | ||
+ | SAGE_tag ?SAGE_tag XREF Pseudogene #SAGE_mapping_info | ||
+ | Microarray_results ?Microarray_results XREF Pseudogene //added for Microarray_results | ||
+ | Remark ?Text #Evidence | ||
+ | Associated_feature ?Feature XREF Associated_with_pseudogene #Evidence | ||
+ | Confidential_remark ?Text | ||
+ | Method UNIQUE ?Method | ||
</pre> | </pre> | ||
== Proposed Changes == | == Proposed Changes == |
Revision as of 09:20, 10 August 2010
Curator Comments/Description
Model
?Pseudogene Evidence #Evidence SMap S_parent UNIQUE Sequence UNIQUE ?Sequence XREF Pseudogene Transposon UNIQUE ?Transposon XREF Pseudogene_child Structure Source_exons Int UNIQUE Int DB_info DB_remark ?Text #Evidence Database ?Database ?Database_field UNIQUE ?Accession_number XREF Pseudogene Origin From_laboratory UNIQUE ?Laboratory Species UNIQUE ?Species Type UNIQUE Coding_pseudogene #Evidence RNA_pseudogene #Evidence Transposon_pseudogene #Evidence Attributes Transcribed #Evidence Fragment #Evidence Properties Isoform #Evidence Visible Gene UNIQUE ?Gene XREF Corresponding_pseudogene // when Pseudogene is live Gene_history UNIQUE ?Gene XREF Corresponding_pseudogene_history // when Pseudogene is dead Matching_cDNA ?Sequence XREF Matching_pseudogene #Evidence Brief_identification UNIQUE ?Text #Evidence Corresponding_PCR_product ?PCR_product XREF Overlaps_pseudogene Corresponding_oligo_set ?Oligo_set XREF Overlaps_pseudogene RNAi_result ?RNAi XREF Pseudogene Variation ?Variation XREF Pseudogene // for completeness of variation connecting to all gene types Expr_pattern ?Expr_pattern XREF Pseudogene Provisional_description ?Text #Evidence Detailed_description ?Text #Evidence Concise_description ?Text #Evidence GO_term ?GO_term XREF Pseudogene ?GO_code #Evidence SAGE_tag ?SAGE_tag XREF Pseudogene #SAGE_mapping_info Microarray_results ?Microarray_results XREF Pseudogene //added for Microarray_results Remark ?Text #Evidence Associated_feature ?Feature XREF Associated_with_pseudogene #Evidence Confidential_remark ?Text Method UNIQUE ?Method