Difference between revisions of "WormBase Model:Position Matrix"
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== Model == | == Model == | ||
<pre> | <pre> | ||
| + | //Position_Matrix class | ||
| + | //General data model for known or inferred binding sites of transcription factors to DNA, accomodating either a straight position-frequency matrix (PFM), or a position-specific weight matrix | ||
| + | ?Position_Matrix Description ?Text #Evidence | ||
| + | Brief_id UNIQUE ?Text // Addition Xiaodong | ||
| + | Type UNIQUE Frequency | ||
| + | Weight | ||
| + | Background_model Text UNIQUE Float | ||
| + | Site_values Text UNIQUE Float REPEAT | ||
| + | Threshold Float | ||
| + | Associated_feature ?Feature XREF Associated_with_Position_Matrix #Evidence | ||
| + | Sites_used UNIQUE Int | ||
| + | Derived_from_matrix ?Position_Matrix | ||
| + | Bound_by_gene_product ?Gene XREF Product_binds_matrix #Evidence | ||
| + | Remark ?Text #Evidence | ||
</pre> | </pre> | ||
== Proposed Changes == | == Proposed Changes == | ||
| + | Background_model | ||
| + | |||
| + | Threshold | ||
| + | |||
| + | Associated_feature | ||
| + | |||
| + | Bound_by_gene_product | ||
Revision as of 08:35, 5 October 2010
Curator Comments/Description
Model
//Position_Matrix class
//General data model for known or inferred binding sites of transcription factors to DNA, accomodating either a straight position-frequency matrix (PFM), or a position-specific weight matrix
?Position_Matrix Description ?Text #Evidence
Brief_id UNIQUE ?Text // Addition Xiaodong
Type UNIQUE Frequency
Weight
Background_model Text UNIQUE Float
Site_values Text UNIQUE Float REPEAT
Threshold Float
Associated_feature ?Feature XREF Associated_with_Position_Matrix #Evidence
Sites_used UNIQUE Int
Derived_from_matrix ?Position_Matrix
Bound_by_gene_product ?Gene XREF Product_binds_matrix #Evidence
Remark ?Text #Evidence
Proposed Changes
Background_model
Threshold
Associated_feature
Bound_by_gene_product
